View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_16 (Length: 437)
Name: NF11870_low_16
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 41172357 - 41171941
Alignment:
| Q |
10 |
cttcttcttctttgcgaattatcatttcattcccttcttcttgcttcaccatctcaagacgtatcagctcattctcattgatattttctttcttattatc |
109 |
Q |
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| T |
41172357 |
cttcttcttctttgcgaattatcatttcattcccttcttcttgcttcaccatctcaagacgtatcagctcattctcattgatattttctttcttattatc |
41172258 |
T |
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| Q |
110 |
gttctgtttctgactcatagtgttgccacgtttctccattcctatctttggattgtgtatggcagcccagatacctagttttcttgatttaggctatatt |
209 |
Q |
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| T |
41172257 |
gttctgtttctgactcatagtgttgccacgtttctccattcctatctttggattgtgtatggcagcccagatacctagttttcttgatttaggctatatt |
41172158 |
T |
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| Q |
210 |
aggttctttaaattcatactgtcgctagatttcaagtgtaatcagattaatttctatttgagttctgtatctgagatgattttaatttctgtttcagcta |
309 |
Q |
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| T |
41172157 |
aggttctttaaattcatactgtcgctagatttcaagtgtaatcagattaatttctatttgagttctgtatctgagatgattttaatttctgtttcagcta |
41172058 |
T |
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| Q |
310 |
attatatttaattttgttgtttcttttcattaacgtctagggagtgacctatatatacttgaagcatataatctggtgaggcctacataccatacccttt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41172057 |
attatatttaattttgttgtttcttttcattaacgtctagggagtgacctatatatacttgaagcatataatctggtgaggcctacataccatacccttt |
41171958 |
T |
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| Q |
410 |
gatgaatctaggttaga |
426 |
Q |
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| T |
41171957 |
gatgaatctaggttaga |
41171941 |
T |
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