View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_19 (Length: 427)
Name: NF11870_low_19
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 46491602 - 46491384
Alignment:
| Q |
3 |
tggaggagcagagagtgaagaccgaagagagctatgcagtagtagtgtggcattaaatgttcgtgtgcccaaccagatttaatgtttaccactatattcc |
102 |
Q |
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| T |
46491602 |
tggaggaacacaaagtgaagaccgaagagagctatgcagtagtagtgtggcattaaatgttcgtgtgcccaaccagatttaatgtttaccactatattcc |
46491503 |
T |
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| Q |
103 |
ttctgattctatatatatccttccaattaccttggcaggtgttagatatcatgagttgttaaagaaattaaaggaagtctaccaaaatttattaaaatac |
202 |
Q |
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| T |
46491502 |
ttctgattctatatatatccttccaattaccttggcaggtgttagatatcatgagttgttaaagaaattaaaggaagtctaccaaaatttattaaaatac |
46491403 |
T |
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| Q |
203 |
acaagtatgaactcttcgg |
221 |
Q |
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| T |
46491402 |
acaagtatgaactcatcgg |
46491384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 238 - 427
Target Start/End: Complemental strand, 46491357 - 46491168
Alignment:
| Q |
238 |
tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttaataacatcatattgtcaggaaaaataaattccctatttatctat |
337 |
Q |
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| T |
46491357 |
tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat |
46491258 |
T |
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| Q |
338 |
tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacaactgtccaacaaagatgattgtttcagtcaattcttctctaatca |
427 |
Q |
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| T |
46491257 |
tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatca |
46491168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 46480325 - 46480255
Alignment:
| Q |
357 |
aaatcacccagcaagaggattgaacaactgtccaacaaagatgattgtttcagtcaattcttctctaatca |
427 |
Q |
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| T |
46480325 |
aaatcacccagcaagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatca |
46480255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 427
Target Start/End: Complemental strand, 51944425 - 51944352
Alignment:
| Q |
354 |
ctaaaatcacccagcaagaggattgaacaactgtccaacaaagatgattgtttcagtcaattcttctctaatca |
427 |
Q |
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| T |
51944425 |
ctaagatcacccggtaagtgggttgagcacctgtccaacaaagatgattgttccagtcaaatcttctctaatca |
51944352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 46498760 - 46498700
Alignment:
| Q |
158 |
ttgttaaagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactctt |
218 |
Q |
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| T |
46498760 |
ttgttaaagaaattagaggaagtctgtcaaaaattattaacatacacaattatgaactctt |
46498700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 405
Target Start/End: Complemental strand, 46474459 - 46474407
Alignment:
| Q |
353 |
gctaaaatcacccagcaagaggattgaacaactgtccaacaaagatgattgtt |
405 |
Q |
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| T |
46474459 |
gctaagatcacccatcaagaggattaagcacctgtccaacaaagatgattgtt |
46474407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 46484576 - 46484504
Alignment:
| Q |
353 |
gctaaaatcacccagcaagaggattgaacaactgtccaacaaagatgattgtttcagtcaattcttctctaat |
425 |
Q |
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| T |
46484576 |
gctaagatcacccatcaagatgattaagcacatgtccaacaaagatgattgttccagccaaatcatctctaat |
46484504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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