View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_20 (Length: 421)
Name: NF11870_low_20
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 32741808 - 32741410
Alignment:
| Q |
18 |
agaaggaagtgcgagaaagaaaattaaaaaaccatgcattcaagtcaaaaactttccatagcaggaatcatatatcatgtgaccaattcaaaacaaattt |
117 |
Q |
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| T |
32741808 |
agaaggaagtgcgagaaagaaaattaaaaaaccatgcattcaagtcaaagactctccatagcaggaatcatatatcatgtaaccaattcaaaacaaattt |
32741709 |
T |
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| Q |
118 |
gatgtttttgtttttcttctttcacatgtagtaatataatatgacagttaattaattaataaatgatcactagtcaacattaaatcgttaaataaaataa |
217 |
Q |
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| T |
32741708 |
gatgtttttgtttttcttctttcacatgtagtaatataatatgacagttaattaattaataaatgatcactagtcaacattaaatcgttaaataaaataa |
32741609 |
T |
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| Q |
218 |
cccatgagtcacacaatttannnnnnnactcaagaatattaggcaaaccaattaatataaatagcacgatccccccatgagatgcttaaatattatagta |
317 |
Q |
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| T |
32741608 |
cacatgagtcacacaatttattcttttactcaagaatgttaggcaaaccaattaatataaatagcacgacccccccatgagatgcttaaatattatagta |
32741509 |
T |
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| Q |
318 |
gtgcaatattcatcttgcttactaaatctccaattcattttcaaagacacacaacaccatgaaggttctcaacgttattttggccttgcctatgcttct |
416 |
Q |
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| T |
32741508 |
gtgcaatattcatcttgcttactaaatctccaattcattttcaaagacacacaacaccatgaaggttctcaacgttattttggccttgcttttgcttct |
32741410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 51 - 416
Target Start/End: Complemental strand, 32738695 - 32738346
Alignment:
| Q |
51 |
atgcattcaagtcaaaaactttccatagcaggaatcat-----atatcatgtgaccaattcaaaacaaatttgatgtttttgtttttcttctttcacatg |
145 |
Q |
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| T |
32738695 |
atgcattcaagtcaaaaactctccatagcaaatagcatgaattatatcatgtgaccaattcaaaacaaatttgatctttttgttttgcttctttcaaatg |
32738596 |
T |
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| Q |
146 |
ta---gtaatataatatgacagttaattaattaataaatgatcactagtcaacattaaatcgttaaat-aaaataacccatgagtcacacaatttannnn |
241 |
Q |
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| T |
32738595 |
taatagtaatataagataaccgttagttaattaataaatgatcactagtcaacattaaatcgttaaataaaaataactcatgagt----taattt----- |
32738505 |
T |
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| Q |
242 |
nnnactcaagaatattaggcaaaccaattaatataaatagcacgatccccccatgagatgcttaaatattatagtagtgcaatattcatcttgcttacta |
341 |
Q |
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| T |
32738504 |
tttactcaagaatgttaggtacaccaattaatataaatagcacgatccccccatgagatgctcaaatatt-------tg---------tcttgcttatta |
32738421 |
T |
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| Q |
342 |
aatctccaattcattttcaaagacacacaacaccatgaaggttctcaacgttattttggccttgcctatgcttct |
416 |
Q |
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| T |
32738420 |
aatctccaattctttttcaaagacacacaacaccatgaaggttctcaaagttattttggccttgcttttgcttct |
32738346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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