View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_21 (Length: 400)
Name: NF11870_low_21
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 35884282 - 35883905
Alignment:
| Q |
17 |
atacccaccaccctaccaaccaaccccatcatgttcccaccaaatcctccaccacacattcgccaacactatcgacannnnnnnttttaccacgccatac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
35884282 |
atacccaccaccctaccaaccaaccccatcatgttcccaccaaatcctccaccacacattcgccaacactatcgacacccccccttttaccacaccatac |
35884183 |
T |
|
| Q |
117 |
accccacccttccattgccctccaccatggacacgtgtcatccttcacttccacgccaaaatcaaaggcgaacaatacgaccgtatcgccgccttatggc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35884182 |
accccacccttccattgccctccaccatggacacgtgtcatccttcacttccacgccaaaatcaaaggcgaacaatacgaccgtatcgccgccttatggc |
35884083 |
T |
|
| Q |
217 |
tcgccggcgtcgagcttcttcgaacaagcaccgctcagcctgataattctagaatcttctggaatgttcgtaaagatattactaaatacacctcccttct |
316 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35884082 |
tcgccggcgtcgagcttctccgaacaagcaccgctcagcctgataattctagaatcttctggaatgttcgtaaagatattactaaatacacctcccttct |
35883983 |
T |
|
| Q |
317 |
tactcaatcaaaccttgacctcactatgatgcttgaaaatatcgttaacgctgaattcaccggcgaatttcatctcac |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||| |
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| T |
35883982 |
tactcaatcaaaccttgacctcactatgatgcttgaaaatatcattaacgcagaattcaccggcgaatttcatatcac |
35883905 |
T |
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