View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_22 (Length: 395)
Name: NF11870_low_22
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 66 - 379
Target Start/End: Original strand, 3225885 - 3226197
Alignment:
| Q |
66 |
tacgtgtttgataacacagtgagtttgccagaagcacggagaaccattgtgatatcaaacatgcacgaatagtgatacatacatgtgaacagcgacatta |
165 |
Q |
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| T |
3225885 |
tacgtgtttgataacaca-tgagtttgccagaagcacggagaaccattgtgatatcaaacatgcacgaatagtgatacatacatgtgaacggcgacatta |
3225983 |
T |
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| Q |
166 |
aggtcatgagcaactccttcaggaattggaacatatgtttcaacagcaactttatgggcttcttcagctcgagctttgacaaaatcatcaatttcagcag |
265 |
Q |
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| T |
3225984 |
aggtcatgagcaactccttcaggaattggaacatatgtttcaacagcaactttatgggcttcttcagctcgagctttgacaaaatcatcaatttcagcag |
3226083 |
T |
|
| Q |
266 |
gagataaaacatgtgcagcctcaaggcatggaatagtaatggcgaaagtaaccaagagaataaaagcaatcttggtagaactttctaccattattttttc |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3226084 |
gagataaaacatgtgcagcctcaaggcatggaatagtaatggcgaaagtaaccaagagaataaaagcaatcttggtagaactttctaccattattttttc |
3226183 |
T |
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| Q |
366 |
catgcccatgtttt |
379 |
Q |
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|||||||||||||| |
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| T |
3226184 |
catgcccatgtttt |
3226197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 281 - 371
Target Start/End: Original strand, 3221256 - 3221346
Alignment:
| Q |
281 |
cagcctcaaggcatggaatagtaatggcgaaagtaaccaagagaataaaagcaatcttggtagaactttctaccattattttttccatgcc |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| || |||||||||| ||||||| |
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| T |
3221256 |
cagcctcaaggcatggaatagtaatggcgaaagtaaccaagaaaataaatgcaatcttagtagaacttcctgccattattttccccatgcc |
3221346 |
T |
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