View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_24 (Length: 387)
Name: NF11870_low_24
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 40181115 - 40180738
Alignment:
| Q |
1 |
tgaaagtttccagagaatactgacacgt----ctcagtgacgttcctcttttccgtgactataggtaccaaattaaatcagctatcaaattcatggactt |
96 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
40181115 |
tgaaagtttccagagagtactgacacgtacgtctcagtgacgttcctgttttccgtgactataggtacaaaattaaatcagctattgaattcatggactt |
40181016 |
T |
|
| Q |
97 |
tgccactcctcgtcaccatcaacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacaccacctcataatcttatccgc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
40181015 |
tgccactcctcgtcaccatcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaacaccaccttataatcttatccac |
40180916 |
T |
|
| Q |
197 |
tttgtagagttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgccccactgctcccactgaatacg |
296 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40180915 |
tttgtagaattggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgccccactgctcccactgaatacg |
40180816 |
T |
|
| Q |
297 |
atgttgcactaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagaccggtattc |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40180815 |
atgttgcactaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagaccggtattc |
40180738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 38605462 - 38605414
Alignment:
| Q |
113 |
catcaacaacattttttactcaaaattattaaaacctcttgtcaaacta |
161 |
Q |
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| T |
38605462 |
catcaaccacattttctactcaaaattattgaaacctcctgtcaaacta |
38605414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 46358821 - 46358978
Alignment:
| Q |
113 |
catcaacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtag |
203 |
Q |
| |
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||||||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || |
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| T |
46358821 |
catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa |
46358920 |
T |
|
| Q |
204 |
agttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgt |
261 |
Q |
| |
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| T |
46358921 |
agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgt |
46358978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 46359020 - 46359081
Alignment:
| Q |
305 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
366 |
Q |
| |
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|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
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| T |
46359020 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
46359081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 116 - 274
Target Start/End: Original strand, 44459253 - 44459420
Alignment:
| Q |
116 |
caacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagt |
206 |
Q |
| |
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|||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || ||| |
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| T |
44459253 |
caacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagt |
44459352 |
T |
|
| Q |
207 |
tggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgc |
274 |
Q |
| |
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|||||||||||||||| ||| | |||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
44459353 |
tggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44459420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 116 - 274
Target Start/End: Original strand, 44466786 - 44466953
Alignment:
| Q |
116 |
caacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagt |
206 |
Q |
| |
|
|||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || ||| |
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| T |
44466786 |
caacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagt |
44466885 |
T |
|
| Q |
207 |
tggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgc |
274 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
44466886 |
tggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44466953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 44460076 - 44460109
Alignment:
| Q |
228 |
atctcatcactacccctgttctggaatcccttgt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
44460076 |
atctcatcactacccctgttctggaatcccttgt |
44460109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 44467609 - 44467642
Alignment:
| Q |
228 |
atctcatcactacccctgttctggaatcccttgt |
261 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
44467609 |
atctcatcactacccctgttctggaatcccttgt |
44467642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 44460150 - 44460211
Alignment:
| Q |
305 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
366 |
Q |
| |
|
|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
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|
| T |
44460150 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
44460211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 44467683 - 44467744
Alignment:
| Q |
305 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
366 |
Q |
| |
|
|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
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|
| T |
44467683 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
44467744 |
T |
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