View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_low_25 (Length: 387)

Name: NF11870_low_25
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_low_25
NF11870_low_25
[»] chr8 (5 HSPs)
chr8 (213-370)||(12664336-12664493)
chr8 (15-86)||(12664537-12664608)
chr8 (72-174)||(32574468-32574570)
chr8 (116-174)||(4638727-4638786)
chr8 (113-155)||(27015389-27015431)
[»] chr6 (2 HSPs)
chr6 (72-174)||(1619780-1619882)
chr6 (116-174)||(19962466-19962525)
[»] chr4 (2 HSPs)
chr4 (80-155)||(35534378-35534453)
chr4 (116-174)||(1975469-1975528)
[»] chr3 (1 HSPs)
chr3 (116-174)||(44198144-44198203)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 213 - 370
Target Start/End: Complemental strand, 12664493 - 12664336
Alignment:
Q  213 aaaagggttgtatctcacatttgcactgattcgacagtcatcaatttttgaatgggaagtgcgaattcgcaatgaagcaatgatcttataagtgattcgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  12664493 aaaagggttgtatctcacatttgcactgattcgacagtcatcaatttttgaatgggaagtgcgaatttgcaatgaagcaatgatcttataagtgattctt 12664394  T
Q  313 tgttataaatgattttactgaaatttgttgattgttgtaggttcgacgtgatcaaaat 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12664393 tgttataaatgattttactgaaatttgttgattgttgtaggttcgacgtgatcaaaat 12664336  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 12664608 - 12664537
Alignment:
Q  15 atgaattatacgtgagattttggtcaattaattggatatcatatgcttccttaactaatctaatatactata 86  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  12664608 atgaattatacgtgagattttggtcaattaattgaatatcatatgcttccttatctaatctaatatactata 12664537  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 32574570 - 32574468
Alignment:
Q  72 atctaatatactatataggacaattcttgtccannnnnnnnaccattttgccctcataggggtattttggtaaattagtaaatgctgtctttccctatat 171  Q
    ||||| || ||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||| ||||| ||||| || |||    
T  32574570 atctactaaactatataggacaattcttgtccattttttttaccattttgcccttataggggtattttggtaaattagtaattgctgcctttctctctat 32574471  T
Q  172 ata 174  Q
    |||    
T  32574470 ata 32574468  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 4638786 - 4638727
Alignment:
Q  116 attttgccctcataggggtattttggtaaattagtaaatgctgtcttt-ccctatatata 174  Q
    |||||||||| |||||||||||| |||||||||| ||||||| ||||| |||||||||||    
T  4638786 attttgcccttataggggtatttaggtaaattagaaaatgctctctttcccctatatata 4638727  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 27015431 - 27015389
Alignment:
Q  113 accattttgccctcataggggtattttggtaaattagtaaatg 155  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  27015431 accattttgcccttatgggggtattttggtaaattagtaaatg 27015389  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 1619882 - 1619780
Alignment:
Q  72 atctaatatactatataggacaattcttgtccannnnnnnnaccattttgccctcataggggtattttggtaaattagtaaatgctgtctttccctatat 171  Q
    ||||| || ||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||| || || ||||| || |||    
T  1619882 atctactaaactatataggacaattcttgtccattttttttaccattttgcccttataggggtattttggtaaattagtaattgttgcctttctctctat 1619783  T
Q  172 ata 174  Q
    |||    
T  1619782 ata 1619780  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 19962466 - 19962525
Alignment:
Q  116 attttgccctcataggggtattttggtaaattagtaaatgctgtcttt-ccctatatata 174  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||    
T  19962466 attttgcccttataggggtattttggtaaattagtaaatgctgcctttcccctatatata 19962525  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 35534378 - 35534453
Alignment:
Q  80 tactatataggacaattcttgtccannnnnnnnaccattttgccctcataggggtattttggtaaattagtaaatg 155  Q
    ||||||||||||||||||||||||         ||||||||||| | |||||||||||||||||||||||||||||    
T  35534378 tactatataggacaattcttgtccctttttttgaccattttgcctttataggggtattttggtaaattagtaaatg 35534453  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 1975528 - 1975469
Alignment:
Q  116 attttgccctcataggggtattttggtaaattagtaaatgctgtcttt-ccctatatata 174  Q
    |||||||||| || ||| ||||||||||||||||||| ||||| |||| |||||||||||    
T  1975528 attttgcccttatggggttattttggtaaattagtaattgctgcctttgccctatatata 1975469  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 44198203 - 44198144
Alignment:
Q  116 attttgccctcataggggtattttggtaaattagtaaatgctgtctttccc-tatatata 174  Q
    |||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  44198203 attttgcccttatagaggtattttggtaaattagtaaatgctgcctttcccatatatata 44198144  T

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