View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_low_32 (Length: 331)

Name: NF11870_low_32
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_low_32
NF11870_low_32
[»] chr8 (2 HSPs)
chr8 (2-207)||(7840351-7840556)
chr8 (56-104)||(13866186-13866235)
[»] chr7 (3 HSPs)
chr7 (56-113)||(38602995-38603053)
chr7 (59-106)||(7754236-7754284)
chr7 (56-111)||(19267389-19267445)
[»] chr1 (3 HSPs)
chr1 (59-114)||(8296166-8296222)
chr1 (59-106)||(51672454-51672502)
chr1 (56-113)||(33749130-33749188)
[»] chr3 (2 HSPs)
chr3 (56-113)||(44253053-44253110)
chr3 (59-106)||(41417141-41417189)
[»] chr5 (2 HSPs)
chr5 (59-103)||(18345696-18345741)
chr5 (70-115)||(18702539-18702584)
[»] chr6 (1 HSPs)
chr6 (59-106)||(14536113-14536161)
[»] chr4 (1 HSPs)
chr4 (59-106)||(29391157-29391205)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 7840351 - 7840556
Alignment:
Q  2 actatgacgacagtgcctcatatattcacacatgcagggatcaaaatgattttgtaaaataacaacccttgattttctactttacacttaactcacttta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7840351 actatgacgacagtgcctcatatattcacacatgcagggatcaaaatgattttgtaaaataacaacccttgattttctactttacacttaactcacttta 7840450  T
Q  102 gaggagccaaattcatggtatggaggctgtttgatggtagtgtatatgaggaattttgtcattaaaattgagtatgtttttactacatctgttaataact 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7840451 gaggagccaaattcatggtatggaggctgtttgatggtagtgtatatgaggaattttgtcattaaaattgagtatgtttttacttcatctgttaataact 7840550  T
Q  202 tgaatg 207  Q
    ||||||    
T  7840551 tgaatg 7840556  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 13866235 - 13866186
Alignment:
Q  56 taaaataacaacccttgattttct-actttacacttaactcactttagag 104  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||    
T  13866235 taaaataacaacccttgattttctgactttacactttattcactttagag 13866186  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 38603053 - 38602995
Alignment:
Q  56 taaaataacaacccttgattttcta-ctttacacttaactcactttagaggagccaaat 113  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||||||| ||||||    
T  38603053 taaaataacaacccttgattttcttgctttacacttcactcactttagaggatccaaat 38602995  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 7754236 - 7754284
Alignment:
Q  59 aataacaacccttgattttct-actttacacttaactcactttagagga 106  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||    
T  7754236 aataacaacccttgattttctcattttacacttaactcactttagagga 7754284  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 19267389 - 19267445
Alignment:
Q  56 taaaataacaacccttgattttct-actttacacttaactcactttagaggagccaa 111  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||||||| ||||    
T  19267389 taaaataacaacccttgattttctcaatttacactttactcactttagaggatccaa 19267445  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 8296222 - 8296166
Alignment:
Q  59 aataacaacccttgattttct-actttacacttaactcactttagaggagccaaatt 114  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||| |||||||    
T  8296222 aataacaacccttgattttctcactttataattaactcactttagaggatccaaatt 8296166  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 51672502 - 51672454
Alignment:
Q  59 aataacaacccttgattttct-actttacacttaactcactttagagga 106  Q
    |||||||||| |||||||||| || ||||||||||||||||||||||||    
T  51672502 aataacaacctttgattttctcacgttacacttaactcactttagagga 51672454  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 33749130 - 33749188
Alignment:
Q  56 taaaataacaacccttgattttct-actttacacttaactcactttagaggagccaaat 113  Q
    |||||||||||||||||| ||||| |||||| |||| | ||||||||||||| ||||||    
T  33749130 taaaataacaacccttgagtttctgactttatactttagtcactttagaggatccaaat 33749188  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 44253053 - 44253110
Alignment:
Q  56 taaaataacaacccttgattttctactttacacttaactcactttagaggagccaaat 113  Q
    ||||||||| ||||||||||||  ||||||||||| | ||||||||||||| ||||||    
T  44253053 taaaataaccacccttgatttttcactttacacttcagtcactttagaggatccaaat 44253110  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 41417189 - 41417141
Alignment:
Q  59 aataacaacccttgattttc-tactttacacttaactcactttagagga 106  Q
    |||||||||||||||||||| ||||||||||||  ||| ||||||||||    
T  41417189 aataacaacccttgattttcttactttacacttttctcgctttagagga 41417141  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 18345741 - 18345696
Alignment:
Q  59 aataacaacccttgattttc-tactttacacttaactcactttaga 103  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||    
T  18345741 aataacaacccttgattttcgtactttatactttactcactttaga 18345696  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 18702539 - 18702584
Alignment:
Q  70 ttgattttctactttacacttaactcactttagaggagccaaattc 115  Q
    ||||||||||  ||||||||| ||||||||| ||||||||||||||    
T  18702539 ttgattttcttatttacactttactcactttggaggagccaaattc 18702584  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 14536161 - 14536113
Alignment:
Q  59 aataacaacccttgattttct-actttacacttaactcactttagagga 106  Q
    |||||||||| |||||||||| ||||||||||| |||| ||||||||||    
T  14536161 aataacaacctttgattttctcactttacacttcactcgctttagagga 14536113  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 29391205 - 29391157
Alignment:
Q  59 aataacaacccttgattttct-actttacacttaactcactttagagga 106  Q
    ||||||||||||  ||||||| ||||||||||| |||||||||||||||    
T  29391205 aataacaaccctcaattttcttactttacactttactcactttagagga 29391157  T

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