View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_39 (Length: 285)
Name: NF11870_low_39
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 26112988 - 26113259
Alignment:
| Q |
1 |
gaaattgttcctataatataataaaagagataaaactatttgcaaagacaatagtttaaatgaatggtataattgtatgaaaagtactacattaaaaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
26112988 |
gaaattgttcctataatataataaaagagataaaattatttgcaaagacaatagtttaaatgaatggtataattgaacgaaaagtactacattaaaaaca |
26113087 |
T |
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| Q |
101 |
tgtattatatttgtaaatgcatagataaaacaaaacatagtacagtataacaactataaaataaaaagactgagactgtgccatatgcaagcgttcctta |
200 |
Q |
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| T |
26113088 |
tgtattatatttgtaaatgcatagataaaacaaaacatagtacagtataacaactataaaataaaaagactgagactgtgccatatgcaagcgttcctta |
26113187 |
T |
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| Q |
201 |
cgttaactccatcaataaatatttcatgactcattcttgtggcatttatataatattgttattccttttctt |
272 |
Q |
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| T |
26113188 |
cgttaactccatcaataaatatttcatgactcattctcgtggcatttatataatattgttattccttttctt |
26113259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 26047890 - 26048006
Alignment:
| Q |
13 |
ataatataataaaagagataaaactatttgcaaagacaatagtttaaatgaatggtataattgtatgaaaagtactacattaaaaacatgtattatattt |
112 |
Q |
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|||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| | ||||||||||||||| ||| |
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| T |
26047890 |
ataatataataaaa-agataaaattatttgcaatgacaatagtttaaataaatggtataattgaaagaaaagtactaggtgaaaaacatgtattatcttt |
26047988 |
T |
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| Q |
113 |
gtaaatgcatagataaaa |
130 |
Q |
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| T |
26047989 |
gtaaatgaatagataaaa |
26048006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 26053071 - 26053187
Alignment:
| Q |
13 |
ataatataataaaagagataaaactatttgcaaagacaatagtttaaatgaatggtataattgtatgaaaagtactacattaaaaacatgtattatattt |
112 |
Q |
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|||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| | ||||||||||||||| ||| |
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| T |
26053071 |
ataatataataaaa-agataaaattatttgcaatgacaatagtttaaataaatggtataattgaaagaaaagtactaggtgaaaaacatgtattatcttt |
26053169 |
T |
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| Q |
113 |
gtaaatgcatagataaaa |
130 |
Q |
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||||||| |||||||||| |
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| T |
26053170 |
gtaaatgaatagataaaa |
26053187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 26089172 - 26089290
Alignment:
| Q |
13 |
ataatataataaaagagataaaactatttgcaaagacaatagtttaaatgaatggtataattgtatgaaaagtactacattaaaaacatgtattatattt |
112 |
Q |
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|||||||||||||| |||||||| | |||||| ||||||||||||||| ||||||||||||| | |||||||||| ||||||||||||||||| ||| |
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| T |
26089172 |
ataatataataaaaaagataaaa--aattgcaatgacaatagtttaaataaatggtataattgaaagaaaagtact--tttaaaaacatgtattatcttt |
26089267 |
T |
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| Q |
113 |
gtaaatgcatagataaaacaaaa |
135 |
Q |
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||||||| |||||||||| |||| |
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| T |
26089268 |
gtaaatgtatagataaaataaaa |
26089290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 26079727 - 26079825
Alignment:
| Q |
32 |
aaaactatttgcaaagacaatagtttaaatgaatggtataattgtatgaaaagtactacattaaaaacatgtattatatttgtaaatgcatagataaaa |
130 |
Q |
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|||| ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| | ||||||||||||||| |||||||||| |||||||||| |
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| T |
26079727 |
aaaattatttgcaatgacaatagtttaaataaatggtataattgaaagaaaagtactaggtgaaaaacatgtattatctttgtaaatgaatagataaaa |
26079825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 26048153 - 26048248
Alignment:
| Q |
155 |
tataaaataaaaagact-gagactgtgccatatgcaagcgttccttacgttaactccatcaataaatatttcatg-actcattcttgtggcattta |
248 |
Q |
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| T |
26048153 |
tataaaataaaaagacttgagactgtgccatatgccagcgttctttacgttaactccatcgataaatgtttcatgaactcattcttttggtattta |
26048248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 26053334 - 26053429
Alignment:
| Q |
155 |
tataaaataaaaagact-gagactgtgccatatgcaagcgttccttacgttaactccatcaataaatatttcatg-actcattcttgtggcattta |
248 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||||| |||||||||| ||| ||||| |
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| T |
26053334 |
tataaaataaaaagacttgagactgtgccatatgccagcgttctttacgttaactccatcgataaatgtttcatgaactcattcttttggtattta |
26053429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 26089782 - 26089853
Alignment:
| Q |
158 |
aaaataaaaagactgagactgtgccatatgcaagcgttccttacgttaactccatcaataaatatttcatga |
229 |
Q |
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|||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||||| |
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| T |
26089782 |
aaaataaaaagactgagactatgccatatgccagcgttctttacgttaactccatcgataaatatttcatga |
26089853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 26079972 - 26080047
Alignment:
| Q |
155 |
tataaaataaaaagact-gagactgtgccatatgcaagcgttccttacgttaactccatcaataaatatttcatga |
229 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||| |||||||| |
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| T |
26079972 |
tataaaataaaaagacttgagactgtgccatatgccagcgttctttacgttaactccatcgataaatgtttcatga |
26080047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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