View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_low_52 (Length: 239)

Name: NF11870_low_52
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_low_52
NF11870_low_52
[»] chr5 (5 HSPs)
chr5 (1-223)||(40181223-40181445)
chr5 (1-117)||(38605707-38605820)
chr5 (40-128)||(40180547-40180635)
chr5 (49-185)||(41885856-41885992)
chr5 (2-108)||(38605014-38605120)
[»] chr8 (5 HSPs)
chr8 (33-160)||(44459540-44459667)
chr8 (33-160)||(44467073-44467200)
chr8 (33-129)||(44460273-44460369)
chr8 (33-129)||(44467806-44467902)
chr8 (33-108)||(34502307-34502382)
[»] chr6 (1 HSPs)
chr6 (62-117)||(410919-410974)
[»] chr1 (1 HSPs)
chr1 (33-129)||(46359143-46359239)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40181223 - 40181445
Alignment:
Q  1 gtggatcatatcagcactacaccttgtgctcctcaaaagagcttgcagtgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40181223 gtggatcatatcagcactacaccttgtgctcctcaaaagagcttgcagtgtatagtaatatgtatcttgatttggcacacattgaaatacgtcaaaatta 40181322  T
Q  101 tgaaaaacatcaagtgctgcctttccttgctgccccataacagagaaggattctatgagtttatttagaatccttgcgttaagaaagtcagtttcatagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  40181323 tgaaaaacatcaagtgctgcctttccttgctgccccataactgagaaggattctatgagtttattgagaatccttgcattaagaaagtcagtttcatagc 40181422  T
Q  201 ggccaattttcttaagcatgtcc 223  Q
    ||||||| | |||||||||||||    
T  40181423 ggccaatatacttaagcatgtcc 40181445  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 38605707 - 38605820
Alignment:
Q  1 gtggatcatatcagcactacaccttgtgctcctcaaaagagcttgcagtgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaatta 100  Q
    |||||| ||||||||||||||| ||||| ||   ||||||||||| |||||| ||||||| || ||||||||||||||||||||||| || |||||  ||    
T  38605707 gtggatgatatcagcactacacgttgtggtc---aaaagagcttgaagtgtaaagtaatatgtgtcttgatttggcacacattgaaagacctcaaacata 38605803  T
Q  101 tgaaaaacatcaagtgc 117  Q
    |||||||| ||||||||    
T  38605804 tgaaaaacttcaagtgc 38605820  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 40180547 - 40180635
Alignment:
Q  40 agcttgcagtgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttcctt 128  Q
    ||||||||||||| ||  ||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||    
T  40180547 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctt 40180635  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 41885992 - 41885856
Alignment:
Q  49 tgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttgctgccccataacagagaag 148  Q
    |||| ||||||| ||||||||||||||| ||||||||||  | ||||| ||||||||||||||  |||| || || ||||   |||||||||  ||||||    
T  41885992 tgtaaagtaatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgtgtgcagctttcccttctcgccccataattgagaag 41885893  T
Q  149 gattctatgagtttatttagaatccttgcgttaagaa 185  Q
     ||||||| ||||||||||||||||  ||||||||||    
T  41885892 aattctattagtttatttagaatccgagcgttaagaa 41885856  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 38605014 - 38605120
Alignment:
Q  2 tggatcatatcagcactacaccttgtgctcctcaaaagagcttgcagtgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaattat 101  Q
    |||| |||||||||||| || |||||  || | |||||||||| ||||||| ||  ||| | ||||||||| |||||||| ||||| || ||||| ||||    
T  38605014 tggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttat 38605113  T
Q  102 gaaaaac 108  Q
    |||||||    
T  38605114 gaaaaac 38605120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 44459667 - 44459540
Alignment:
Q  33 tcaaaagagcttgcagtgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttgctg 132  Q
    |||||||||||||||| ||| ||||||| ||||| |||||||||||||| |||||  | |||||  |||||||||| |||||||| |  || ||||   |    
T  44459667 tcaaaagagcttgcagagtaaagtaatatgtatcgtgatttggcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttaccttctcg 44459568  T
Q  133 ccccataacagagaaggattctatgagt 160  Q
    ||||||||  |||||||||| |||||||    
T  44459567 ccccataattgagaaggattgtatgagt 44459540  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 44467200 - 44467073
Alignment:
Q  33 tcaaaagagcttgcagtgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttgctg 132  Q
    |||||||||||||||| ||| ||||||| ||||| |||||||||||||| |||||  | |||||  |||||||||| |||||||| |  || ||||   |    
T  44467200 tcaaaagagcttgcagagtaaagtaatatgtatcgtgatttggcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttaccttctcg 44467101  T
Q  133 ccccataacagagaaggattctatgagt 160  Q
    ||||||||  |||||||||| |||||||    
T  44467100 ccccataattgagaaggattgtatgagt 44467073  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 44460369 - 44460273
Alignment:
Q  33 tcaaaagagcttgcagtgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttg 129  Q
    |||||| ||||||||| |||| |  ||| ||||||||||| ||||| ||||||||| | ||||| ||||||||||| || ||| | | |||||||||    
T  44460369 tcaaaaaagcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttg 44460273  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 44467902 - 44467806
Alignment:
Q  33 tcaaaagagcttgcagtgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttg 129  Q
    |||||| ||||||||| |||| |  ||| ||||||||||| ||||| ||||||||| | ||||| ||||||||||| || ||| | | |||||||||    
T  44467902 tcaaaaaagcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttg 44467806  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 34502307 - 34502382
Alignment:
Q  33 tcaaaagagcttgcagtgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaac 108  Q
    |||||||||||| ||||||| ||   || |||||| |||| ||||||||||||||| | ||||| |||||||||||    
T  34502307 tcaaaagagctttcagtgtaaaggtgtatgtatctcgattcggcacacattgaaatgcctcaaatttatgaaaaac 34502382  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 410974 - 410919
Alignment:
Q  62 gtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgc 117  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||    
T  410974 gtatcttgatttggaacacattgaaatacctcaaatttatgaaaaacttcaagtgc 410919  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 46359239 - 46359143
Alignment:
Q  33 tcaaaagagcttgcagtgtatagtaataagtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttg 129  Q
    |||||| ||||||||| |||| |  ||| ||||||||||| ||||| ||||||||| | ||||| ||||||||||| || ||| | | |||||||||    
T  46359239 tcaaaaaagcttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttg 46359143  T

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