View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_55 (Length: 239)
Name: NF11870_low_55
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 10580379 - 10580224
Alignment:
| Q |
16 |
ataatggacacaaacatattccacacatcatgattttactggttctataaaactgaagtcaatatacacgagtttctggcgtatacaattaaattatgaa |
115 |
Q |
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| T |
10580379 |
ataatggacacaaacatattccacacatcatgattttactggttctataaaactgaagtcaatatacatgagtttctggcgtatacaattaaattatgaa |
10580280 |
T |
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| Q |
116 |
atattttttacctgtttttccataaaaatttatcagaaatcatcataagcatcaag |
171 |
Q |
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| T |
10580279 |
atattttttacctgtttttccataaaaatttataagaaatcatcataagcatcaag |
10580224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 7443971 - 7443853
Alignment:
| Q |
100 |
acaattaaattatgaaatattttttacctgtttttccataaaaatttatcagaaatcatcataagcatcaagtttaggaatcaagggcttcatcatctac |
199 |
Q |
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| T |
7443971 |
acaactaaaatatgaaatatttttgacatgtttttcaattaaaatttatgagaattctttataagaatcaagtttgggaaataag---ctcttcatctac |
7443875 |
T |
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| Q |
200 |
tcttatattttgtaacaagaag |
221 |
Q |
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| T |
7443874 |
tcttatcttctgtaacaagaag |
7443853 |
T |
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