View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_low_56 (Length: 238)

Name: NF11870_low_56
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_low_56
NF11870_low_56
[»] chr2 (9 HSPs)
chr2 (67-223)||(43600585-43600750)
chr2 (1-114)||(18133999-18134112)
chr2 (1-114)||(18128785-18128898)
chr2 (5-114)||(16026626-16026735)
chr2 (5-114)||(16027537-16027646)
chr2 (1-111)||(43599652-43599762)
chr2 (6-114)||(2916211-2916319)
chr2 (71-114)||(41427119-41427162)
chr2 (63-114)||(41426210-41426261)
[»] chr1 (17 HSPs)
chr1 (1-114)||(3772399-3772512)
chr1 (1-114)||(45215506-45215619)
chr1 (1-114)||(9362783-9362896)
chr1 (1-114)||(28418902-28419015)
chr1 (1-114)||(36322361-36322474)
chr1 (1-114)||(3773368-3773481)
chr1 (1-114)||(28419892-28420005)
chr1 (1-114)||(33554844-33554957)
chr1 (1-114)||(9359742-9359855)
chr1 (1-114)||(15622184-15622297)
chr1 (1-114)||(36096992-36097105)
chr1 (1-114)||(45216521-45216634)
chr1 (1-114)||(15623916-15624030)
chr1 (1-114)||(36087661-36087774)
chr1 (6-114)||(43741574-43741681)
chr1 (1-53)||(36726371-36726423)
chr1 (1-53)||(36725531-36725583)
[»] scaffold0025 (2 HSPs)
scaffold0025 (1-114)||(4582-4695)
scaffold0025 (1-114)||(3632-3745)
[»] chr7 (12 HSPs)
chr7 (1-114)||(39139737-39139850)
chr7 (1-114)||(36965535-36965648)
chr7 (1-114)||(42665140-42665253)
chr7 (1-114)||(46293567-46293680)
chr7 (1-114)||(42666063-42666176)
chr7 (5-114)||(46294497-46294606)
chr7 (1-114)||(3312236-3312349)
chr7 (1-114)||(36966395-36966508)
chr7 (1-114)||(39140652-39140765)
chr7 (1-114)||(46972497-46972611)
chr7 (70-114)||(46972333-46972377)
chr7 (9-53)||(15308492-15308536)
[»] chr6 (7 HSPs)
chr6 (1-114)||(17409416-17409529)
chr6 (1-114)||(8981152-8981265)
chr6 (1-114)||(13218872-13218985)
chr6 (1-114)||(28535529-28535642)
chr6 (1-114)||(8980228-8980341)
chr6 (1-114)||(17408385-17408498)
chr6 (1-114)||(13219891-13220004)
[»] chr4 (18 HSPs)
chr4 (1-114)||(46264721-46264834)
chr4 (1-114)||(46263692-46263805)
chr4 (3-114)||(11315491-11315602)
chr4 (1-111)||(5340106-5340216)
chr4 (1-98)||(11320763-11320860)
chr4 (1-53)||(5338011-5338063)
chr4 (1-114)||(55604095-55604206)
chr4 (1-114)||(35323388-35323501)
chr4 (1-114)||(40087175-40087288)
chr4 (5-114)||(55601209-55601321)
chr4 (6-114)||(29618628-29618736)
chr4 (6-114)||(49403360-49403467)
chr4 (65-114)||(5337979-5338028)
chr4 (1-54)||(35322915-35322968)
chr4 (1-54)||(47837375-47837428)
chr4 (1-114)||(19842215-19842327)
chr4 (1-54)||(1555733-1555786)
chr4 (1-54)||(49404162-49404214)
[»] chr3 (9 HSPs)
chr3 (1-114)||(41804857-41804970)
chr3 (1-114)||(2892914-2893027)
chr3 (1-114)||(41496131-41496244)
chr3 (1-114)||(2891985-2892098)
chr3 (1-114)||(41497051-41497164)
chr3 (1-114)||(54036187-54036300)
chr3 (1-114)||(54035577-54035690)
chr3 (7-114)||(30427402-30427509)
chr3 (128-182)||(48588588-48588642)
[»] chr5 (12 HSPs)
chr5 (1-114)||(23359022-23359135)
chr5 (8-114)||(25435139-25435245)
chr5 (1-114)||(23357540-23357653)
chr5 (1-114)||(24116526-24116639)
chr5 (5-114)||(25433104-25433212)
chr5 (1-114)||(42834147-42834260)
chr5 (1-99)||(42833239-42833337)
chr5 (1-54)||(24115678-24115731)
chr5 (66-114)||(8619451-8619499)
chr5 (6-114)||(8618688-8618794)
chr5 (1-53)||(32780905-32780957)
chr5 (65-114)||(32780873-32780922)
[»] chr8 (8 HSPs)
chr8 (1-114)||(39116629-39116742)
chr8 (1-114)||(7889823-7889936)
chr8 (2-114)||(7888740-7888852)
chr8 (1-107)||(39117559-39117665)
chr8 (1-52)||(10635247-10635298)
chr8 (7-54)||(13101787-13101834)
chr8 (65-114)||(9177443-9177492)
chr8 (1-53)||(9177408-9177460)
[»] scaffold0347 (2 HSPs)
scaffold0347 (1-111)||(13267-13377)
scaffold0347 (69-114)||(12460-12505)
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-53)||(53247-53299)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 67 - 223
Target Start/End: Original strand, 43600585 - 43600750
Alignment:
Q  67 agggaccaataccaaaactgggcgaaagtgcagggactaaacacacat---------aattatataaacacttatcctataagcacttacatataagtta 157  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| ||||||||||||||||    
T  43600585 agggaccaatgtcaaaactgggcgaaagtgcagggactaaacacacatttaagccttaattatataaacacttatcctataagtacttacatataagtta 43600684  T
Q  158 tttctacgctaaaatataaaataaaactgttttcataagttattatgaagagtttatgaaactaag 223  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43600685 tttctacgcaaaaatataaaataaaactgttttcataagttattatgaagagtttatgaaactaag 43600750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 18133999 - 18134112
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||    
T  18133999 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgcagggaccaatgccaaaactgggcgaaagtgcagg 18134098  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  18134099 gactaaacacacat 18134112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 18128898 - 18128785
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| ||||||||| |||||||||||||    
T  18128898 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgtcaaacaaaaaaaagcgcagggaccaatgccaaaactgagcgaaagtgcagg 18128799  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  18128798 gactaaacacacat 18128785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 16026735 - 16026626
Alignment:
Q  5 ggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggact 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||        ||| ||||| |||| |||||||||||||||||||||||||||    
T  16026735 ggaaggactaaagccaaaagttttagaaagtgcagagaccaatgccaaacaaaaaaaagcgtagggatcaatgccaaaactgggcgaaagtgcagggact 16026636  T
Q  105 aaacacacat 114  Q
    ||||||||||    
T  16026635 aaacacacat 16026626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 16027537 - 16027646
Alignment:
Q  5 ggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggact 104  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||        ||  |||||||||| |||||||||||||||||||||||||||    
T  16027537 ggaaggactaaagccaaaaattttagaaagtgcagggactaatgccaaacaaaaaaaagcatagggaccaatgccaaaactgggcgaaagtgcagggact 16027636  T
Q  105 aaacacacat 114  Q
    ||||||||||    
T  16027637 aaacacacat 16027646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 43599762 - 43599652
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||         ||| |||||||||| ||||||||  |||||||||||||    
T  43599762 taacggaaggactaaagccaaaagttttagaaagtgcaggggtcaatgccaaataaaaaaaagcgtagggaccaatgccaaaactaagcgaaagtgcagg 43599663  T
Q  101 gactaaacaca 111  Q
    |||||||||||    
T  43599662 gactaaacaca 43599652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 2916211 - 2916319
Alignment:
Q  6 gaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggacta 105  Q
    |||||| |||| |||||| ||||| ||||||||| |||||||| |||||        | ||||||||||| ||||||| |||| ||||||||||||||||    
T  2916211 gaaggattaaaaccaaaaattttacaaagtgcagagaccaatgtcaaacaaaaaatagtgcagggaccaaaaccaaaattgggtgaaagtgcagggacta 2916310  T
Q  106 aacacacat 114  Q
    |||||||||    
T  2916311 aacacacat 2916319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 41427119 - 41427162
Alignment:
Q  71 accaataccaaaactgggcgaaagtgcagggactaaacacacat 114  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
T  41427119 accaataccaaaactggacgaaagtgcaaggactaaacacacat 41427162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 41426261 - 41426210
Alignment:
Q  63 gcgcagggaccaataccaaaactgggcgaaagtgcagggactaaacacacat 114  Q
    |||||||||||||| | |||| ||| |||||||||| |||||||||||||||    
T  41426261 gcgcagggaccaatgctaaaattggacgaaagtgcaaggactaaacacacat 41426210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 3772512 - 3772399
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||    
T  3772512 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggaccaataccaaaactgggcgaaagtgcagg 3772413  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  3772412 gactaaacacacat 3772399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 45215619 - 45215506
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||    
T  45215619 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggaccaataccaaaactgggcgaaagtgcagg 45215520  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  45215519 gactaaacacacat 45215506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 9362783 - 9362896
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         || ||||||||||||||||||||||||||||||||||    
T  9362783 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaatcgtagggaccaataccaaaactgggcgaaagtgcagg 9362882  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  9362883 gactaaacacacat 9362896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 28419015 - 28418902
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||| ||||||||||||    
T  28419015 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggaccaataccaaaactggacgaaagtgcagg 28418916  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  28418915 gactaaacacacat 28418902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 36322474 - 36322361
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| |||||||||| |||||||||||||||||||||||    
T  36322474 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcagg 36322375  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  36322374 gactaaacacacat 36322361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 3773368 - 3773481
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||| |||||||||| |||||||||||||||||||||||    
T  3773368 taacggaaggactaaagccaaaagttttagaaagtgcaaggaccaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcagg 3773467  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  3773468 gactaaacacacat 3773481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 28419892 - 28420005
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||| |||||||||| |||||||||||||||||||||||    
T  28419892 taacggaaggactaaagccaaaagttttagaaagtgcaaggaccaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcagg 28419991  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  28419992 gactaaacacacat 28420005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 33554957 - 33554844
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||| ||||||||||||||||||| |||    
T  33554957 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaataccaaacaaaaaaaagcgcagggaccaatgccaaaactgggcgaaagtgtagg 33554858  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  33554857 gactaaacacacat 33554844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 9359855 - 9359742
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||        ||| |||||||||| |||||||||||||||||||||||    
T  9359855 taacggaaggactaaagtcaaaagttttagaaagtgcaaggaccaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcagg 9359756  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  9359755 gactaaacacacat 9359742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 15622297 - 15622184
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||        || ||||||||||| ||||||||  |||||||||||||    
T  15622297 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccagacaaaaaaaagcacagggaccaatgccaaaactaagcgaaagtgcagg 15622198  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  15622197 gactaaacacacat 15622184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 36096992 - 36097105
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||| ||| |||||| |||||||||| ||||||||||||    
T  36096992 taacggaaggactaaagccaaaagttttagaaagtgcagggactaatgccaaacaaaaaaaagcgtaggaaccaatgccaaaactggacgaaagtgcagg 36097091  T
Q  101 gactaaacacacat 114  Q
    || |||||||||||    
T  36097092 gaataaacacacat 36097105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 45216521 - 45216634
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||        ||| ||||||||||  ||||||||||| ||||||||||    
T  45216521 taacggaaggactaaagccaaaagttttagaaagtgcaaggaccaatgtcaaacaaaaaaaagcgtagggaccaatgtcaaaactgggcaaaagtgcagg 45216620  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  45216621 gactaaacacacat 45216634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 15623916 - 15624030
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaac-cnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcag 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||         ||| ||||||||||  |||||||| ||||||||||||    
T  15623916 taacggaaggactaaagtcaaaagttttagaaagtgcagggaccaatgccaaacaaaaagaaagcgtagggaccaatggcaaaactgagcgaaagtgcag 15624015  T
Q  100 ggactaaacacacat 114  Q
    |||||||||||||||    
T  15624016 ggactaaacacacat 15624030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 36087774 - 36087661
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| || || |||| | |||||||| ||||||||||||    
T  36087774 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagagatcaatgctaaaactggacgaaagtgcagg 36087675  T
Q  101 gactaaacacacat 114  Q
     |||||||||||||    
T  36087674 aactaaacacacat 36087661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 43741574 - 43741681
Alignment:
Q  6 gaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggacta 105  Q
    ||||||||||| |||||||||||| || |||||||||||||| ||||| |       |||||||||||||   ||||| || | ||||||||||||||||    
T  43741574 gaaggactaaaaccaaaagttttacaaggtgcagggaccaataccaaa-caaaaaaagcgcagggaccaaagtcaaaattgagtgaaagtgcagggacta 43741672  T
Q  106 aacacacat 114  Q
    |||||||||    
T  43741673 aacacacat 43741681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36726371 - 36726423
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaa 53  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  36726371 taacagaaggactaatgccaaaagttttataaagtgcagggaccaataccaaa 36726423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36725583 - 36725531
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaa 53  Q
    |||| |||||||||  ||||||||||||| |||||||||||||||||| ||||    
T  36725583 taacagaaggactattgccaaaagttttataaagtgcagggaccaatgtcaaa 36725531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4582 - 4695
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         || ||||||||||||||||||||||||||||||||||    
T  4582 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaaacgtagggaccaataccaaaactgggcgaaagtgcagg 4681  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  4682 gactaaacacacat 4695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 3745 - 3632
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||| |||||||||| |||||||||| ||||||||||||    
T  3745 taacggaaggactaaagccaaaagttttagaaagtgcaaggaccaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactggacgaaagtgcagg 3646  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  3645 gactaaacacacat 3632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 39139850 - 39139737
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||| ||||||    
T  39139850 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggaccaataccaaaactgggcgaaattgcagg 39139751  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  39139750 gactaaacacacat 39139737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 36965648 - 36965535
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||| |||| |||||||||||||||||||||||    
T  36965648 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggatcaatgccaaaactgggcgaaagtgcagg 36965549  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  36965548 gactaaacacacat 36965535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 42665253 - 42665140
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||| |||||||||| |||||||||||||||||||||||    
T  42665253 taacggaaggactaaagccaaaagttttagaaagtgcagggactaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcagg 42665154  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  42665153 gactaaacacacat 42665140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 46293680 - 46293567
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||| |||| |||||||||||||||||||||||    
T  46293680 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggatcaatgccaaaactgggcgaaagtgcagg 46293581  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  46293580 gactaaacacacat 46293567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 42666063 - 42666176
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||| |||| |||||||| ||||||||||||||    
T  42666063 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggatcaatgccaaaactaggcgaaagtgcagg 42666162  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  42666163 gactaaacacacat 42666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 46294497 - 46294606
Alignment:
Q  5 ggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggact 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||        ||| |||||||||| |||||||||||||||||||||||||||    
T  46294497 ggaaggactaaagccaaaagttttagaaagtgcagggactaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcagggact 46294596  T
Q  105 aaacacacat 114  Q
    ||||||||||    
T  46294597 aaacacacat 46294606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 3312236 - 3312349
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||| |||||| |||||||||| ||||||||||||    
T  3312236 taacgtaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtaggaaccaatgccaaaactggacgaaagtgcagg 3312335  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  3312336 gactaaacacacat 3312349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 36966395 - 36966508
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||| ||||| |||| ||||||||||||||||||||| |    
T  36966395 taacggaaggactaaagccaaaagttttagaaagtgcagggactaatgccaaacaaaaaaaagcgtagggatcaatgccaaaactgggcgaaagtgcatg 36966494  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  36966495 gactaaacacacat 36966508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 39140652 - 39140765
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||| | |||||||| |||||||||| ||||||||||||    
T  39140652 taacggaaggactaaagccaaaagttttagaaagtgcaaggaccaatgccaaacaaaaaaaagcgtaaggaccaatgccaaaactggacgaaagtgcagg 39140751  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  39140752 gactaaacacacat 39140765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 46972497 - 46972611
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaac-cnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcag 99  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||         ||| ||||||||||||||||| |||| ||||||||||    
T  46972497 taactgaaggactaaagccaaaagttttagaaagtgcaggggccaatgccaaacaaaaaaaaagcgtagggaccaataccaaaattgggtgaaagtgcag 46972596  T
Q  100 ggactaaacacacat 114  Q
    |||||||||||||||    
T  46972597 ggactaaacacacat 46972611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 46972377 - 46972333
Alignment:
Q  70 gaccaataccaaaactgggcgaaagtgcagggactaaacacacat 114  Q
    |||||||  |||||||||||||||||||||||| |||||||||||    
T  46972377 gaccaatgtcaaaactgggcgaaagtgcagggattaaacacacat 46972333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 15308536 - 15308492
Alignment:
Q  9 ggactaaagccaaaagttttagaaagtgcagggaccaatgccaaa 53  Q
    ||||||| ||||||||||||| |||||| ||| ||||||||||||    
T  15308536 ggactaatgccaaaagttttataaagtgtaggaaccaatgccaaa 15308492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 17409416 - 17409529
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| |||||||||| |||||||||||||||||||||||    
T  17409416 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcagg 17409515  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  17409516 gactaaacacacat 17409529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 8981152 - 8981265
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||| |||||||| ||||||||||||||    
T  8981152 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaataccaaacaaaaaaaagcgcagggaccaatgccaaaactaggcgaaagtgcagg 8981251  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  8981252 gactaaacacacat 8981265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13218985 - 13218872
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||| |||||||||| |||||||||||||||||||||||    
T  13218985 taacggaaggactaaagccaaaagttttagaaagtgcagggactaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcagg 13218886  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  13218885 gactaaacacacat 13218872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 28535642 - 28535529
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||| ||||||||||||    
T  28535642 taacggaaggactaaaaccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgcagggaccaatgccaaaactggacgaaagtgcagg 28535543  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  28535542 gactaaacacacat 28535529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 8980341 - 8980228
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||| ||||||||| ||||||||| |||    
T  8980341 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaataccaaacaaaaaaaagcgcagggaccaatgccaaaactgagcgaaagtgtagg 8980242  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  8980241 gactaaacacacat 8980228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 17408498 - 17408385
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| |||||||||| ||||||| ||||||||||||| |    
T  17408498 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggaccaatgccaaaacggggcgaaagtgcaag 17408399  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  17408398 gactaaacacacat 17408385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13219891 - 13220004
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||| |||| |||||||| ||||||||||||||    
T  13219891 taacgaaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggatcaatgccaaaactaggcgaaagtgcagg 13219990  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  13219991 gactaaacacacat 13220004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 46264721 - 46264834
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| |||||||||| |||||||||||||||||||||||    
T  46264721 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcagg 46264820  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  46264821 gactaaacacacat 46264834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 46263805 - 46263692
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| |||||||||| ||||||| |||||||||||||||    
T  46263805 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggaccaatgccaaaacggggcgaaagtgcagg 46263706  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  46263705 gactaaacacacat 46263692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 11315602 - 11315491
Alignment:
Q  3 acggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcaggga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||| |||||| |||||||||| ||||||||||||||    
T  11315602 acggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgcaggaaccaatgccaaaactggacgaaagtgcaggga 11315503  T
Q  103 ctaaacacacat 114  Q
    ||||||||||||    
T  11315502 ctaaacacacat 11315491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 5340106 - 5340216
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||        | |||||||||||| |||||| | ||||||||||||||    
T  5340106 taacggaatgactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagtgcagggaccaatgccaaaattaggcgaaagtgcagg 5340205  T
Q  101 gactaaacaca 111  Q
    |||||||||||    
T  5340206 gactaaacaca 5340216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 11320763 - 11320860
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgca 98  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||        |||||||||||||| |||||||||||||||||||||    
T  11320763 taacggaaggactaaagccaaaagttttagaaagtacagggactaatgccaaacaaaaaaaagcgcagggaccaatgccaaaactgggcgaaagtgca 11320860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5338063 - 5338011
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaa 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5338063 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaa 5338011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 55604095 - 55604206
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||         || |||||||||| | |||| ||||||||||||||||    
T  55604095 taacggaaggactaaagccaaaagttttacaaagtgcaaggaccaatgccaaac--aaaaaaacgtagggaccaatgctaaaattgggcgaaagtgcagg 55604192  T
Q  101 gactaaacacacat 114  Q
    ||| ||||||||||    
T  55604193 gaccaaacacacat 55604206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 35323388 - 35323501
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| || |||| ||| ||||| |||||     
T  35323388 taacagaaggaataaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgcagggaccaacactaaaattggacgaaaatgcaga 35323487  T
Q  101 gactaaacacacat 114  Q
     |||||||| ||||    
T  35323488 aactaaacatacat 35323501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 40087175 - 40087288
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||| |||||||||||  ||||||||||| |||||||| || ||||||||||||        |||||||||||||| |||||| || | |||||||||||    
T  40087175 taacagaaggactaaaatcaaaagttttacaaagtgcaagggccaatgccaaacaaaaaaaagcgcagggaccaatgccaaaattgagtgaaagtgcagg 40087274  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  40087275 gactaaacacacat 40087288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 55601321 - 55601209
Alignment:
Q  5 ggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnng---cgcagggaccaataccaaaactgggcgaaagtgcaggg 101  Q
    ||||||||||||||||||||||||| ||||||||| || ||||| |||||            | ||||||||||| |||||||||| |||||||||||||    
T  55601321 ggaaggactaaagccaaaagttttacaaagtgcagagatcaatgtcaaacaaaaaaaaaaaacacagggaccaatgccaaaactggacgaaagtgcaggg 55601222  T
Q  102 actaaacacacat 114  Q
    |||||||||||||    
T  55601221 actaaacacacat 55601209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 29618736 - 29618628
Alignment:
Q  6 gaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggacta 105  Q
    |||||| |||| |||||||||||| ||||||||||||| ||||||||||        |||||||||||||    |||| |||| ||||||||| ||||||    
T  29618736 gaaggattaaaaccaaaagttttacaaagtgcagggactaatgccaaacaaaaaaaagcgcagggaccaaagttaaaattgggtgaaagtgcaaggacta 29618637  T
Q  106 aacacacat 114  Q
    |||||||||    
T  29618636 aacacacat 29618628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 49403467 - 49403360
Alignment:
Q  6 gaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggacta 105  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||||| |        |||||  ||||| ||||||| ||| ||||| |||||||||||    
T  49403467 gaaggactaaagctaaaagtttcagaaagtgcagggatcaatgccaaa-caaaaaaaacgcagaaaccaacaccaaaattggacgaaaatgcagggacta 49403369  T
Q  106 aacacacat 114  Q
    |||||||||    
T  49403368 aacacacat 49403360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 5338028 - 5337979
Alignment:
Q  65 gcagggaccaataccaaaactgggcgaaagtgcagggactaaacacacat 114  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  5338028 gcagggaccaatgccaaaactgggggaaagtgcaaggactaaacacacat 5337979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35322968 - 35322915
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaac 54  Q
    |||| ||||||| |||| ||||||||||| ||||||||||||| ||||||||||    
T  35322968 taacagaaggacaaaaggcaaaagttttataaagtgcagggactaatgccaaac 35322915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 47837428 - 47837375
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaac 54  Q
    |||| ||| |||| ||||||||||||||||||||||||||||| |||| |||||    
T  47837428 taacagaaagacttaagccaaaagttttagaaagtgcagggacaaatgtcaaac 47837375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 19842327 - 19842215
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||| |||||| |||| |||||||||||| ||| ||  ||||||||||||||||        || ||||||||||| |||||| |||| ||||||||| |    
T  19842327 taacagaaggattaaaaccaaaagttttacaaactgtggggaccaatgccaaac-aaaaaaagcacagggaccaatgccaaaattgggtgaaagtgcatg 19842229  T
Q  101 gactaaacacacat 114  Q
    ||| ||||||||||    
T  19842228 gaccaaacacacat 19842215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1555786 - 1555733
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaac 54  Q
    |||| |||||||||  ||||||||||||| ||||||||||||| |||| |||||    
T  1555786 taacagaaggactattgccaaaagttttataaagtgcagggactaatggcaaac 1555733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 49404162 - 49404214
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaac 54  Q
    |||| |||||||||||| |||||||||||| |||||||| ||| ||||||||||    
T  49404162 taacagaaggactaaaggcaaaagttttag-aagtgcagagactaatgccaaac 49404214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 41804970 - 41804857
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||||||||||| |    
T  41804970 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggaccaataccaaaactgggcgaaagtgcaag 41804871  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  41804870 gactaaacacacat 41804857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 2892914 - 2893027
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||| |||||||||| |||||||||||||||||||||||    
T  2892914 taacggaaggactaaagccaaaagttttagaaagtgcagggactaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcagg 2893013  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  2893014 gactaaacacacat 2893027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 41496244 - 41496131
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||| |||| |||||||||||||||||||||||    
T  41496244 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggatcaatgccaaaactgggcgaaagtgcagg 41496145  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  41496144 gactaaacacacat 41496131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 2892098 - 2891985
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||| ||||| |||| |||||||||||||||||||||||    
T  2892098 taacggaaggactaaagccaaaagttttagaaagtgtagggaccaatgccaaacaaaaaaaagcgtagggatcaatgccaaaactgggcgaaagtgcagg 2891999  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  2891998 gactaaacacacat 2891985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 41497051 - 41497164
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||         || |||||||||| |||||||||||| ||||||||||    
T  41497051 taacggaaggactaaagtcaaaagttttagaaagtgcagggactaatgccaaacaaaaaaaaacgtagggaccaatgccaaaactgggcaaaagtgcagg 41497150  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  41497151 gactaaacacacat 41497164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 54036187 - 54036300
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||        | | |||||||||| |||||||||||||||||||||||    
T  54036187 taacggaaggattaaagccaaaagttttagaaaatgcagtgaccaatgccaaacaaaaaaaagtgtagggaccaatgccaaaactgggcgaaagtgcagg 54036286  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  54036287 gactaaacacacat 54036300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 54035690 - 54035577
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||          ||| ||||| |||| |||||||||  |||||||| ||     
T  54035690 taacagaaggactaaagccaaaagttttagaaagtgcagagaccaatgccaacaaaaaaaaagcgtagggatcaatgccaaaactgaacgaaagtgtaga 54035591  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  54035590 gactaaacacacat 54035577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 30427509 - 30427402
Alignment:
Q  7 aaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggactaa 106  Q
    ||||||||| |||||||  |||| ||||||||||||||||||||||||        | |||||||||||  |||||| |||  |||||||||||||||||    
T  30427509 aaggactaatgccaaaaaatttataaagtgcagggaccaatgccaaacaaaaaaaagtgcagggaccaaagccaaaattggatgaaagtgcagggactaa 30427410  T
Q  107 acacacat 114  Q
    ||| ||||    
T  30427409 acaaacat 30427402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 48588588 - 48588642
Alignment:
Q  128 cttatcctataagcacttacatataagttatttctacgctaaaatataaaataaa 182  Q
    |||||| ||||||  |||||||||||||||||||||   ||||||||||||||||    
T  48588588 cttatcatataagagcttacatataagttatttctataataaaatataaaataaa 48588642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 23359022 - 23359135
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||| ||||||||||||| ||||||||||||||    
T  23359022 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaacagcgtagggatcaataccaaaactaggcgaaagtgcagg 23359121  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  23359122 gactaaacacacat 23359135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 25435139 - 25435245
Alignment:
Q  8 aggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggactaaa 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||  |||||||||||||||||||||||||||||    
T  25435139 aggaataaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgcagggaccaatgtcaaaactgggcgaaagtgcagggactaaa 25435238  T
Q  108 cacacat 114  Q
    |||||||    
T  25435239 cacacat 25435245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 23357653 - 23357540
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||         ||| |||||||||| ||||||||| |||||||||||||    
T  23357653 taacggaaggactaaagccaaaagttttagaaagtgcagggactaatgccaaataaaaaaaagcgtagggaccaatgccaaaactgagcgaaagtgcagg 23357554  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  23357553 gactaaacacacat 23357540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 24116526 - 24116639
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||         || ||||||||||  ||||||||||||||||||||||    
T  24116526 taacggaaggactaaagccaaaagttttagaaagtgcagggactaatgccaaacaaaaaaaaacgtagggaccaatgtcaaaactgggcgaaagtgcagg 24116625  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  24116626 gactaaacacacat 24116639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 25433212 - 25433104
Alignment:
Q  5 ggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggact 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        | |||||||||||| ||||||||||||||||||||| |||||    
T  25433212 ggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagtgcagggaccaatgccaaaactgggcgaaagtgca-ggact 25433114  T
Q  105 aaacacacat 114  Q
    ||||| ||||    
T  25433113 aaacaaacat 25433104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 42834147 - 42834260
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||  ||||| |||| |||||||| ||||||| ||||||    
T  42834147 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcatagggatcaatgccaaaactaggcgaaaatgcagg 42834246  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  42834247 gactaaacacacat 42834260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 42833337 - 42833239
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcag 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||        ||| |||||||||| ||||||||||||||||||||||    
T  42833337 taacggaaggactaaagccaaaagttttagaaagtgcagagactaatgccaaacaaaaaaaagcgtagggaccaatgccaaaactgggcgaaagtgcag 42833239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24115731 - 24115678
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaac 54  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  24115731 taacggaaggactaaaggcaaaagttttagaaagtgcggggaccaatgccaaac 24115678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 8619451 - 8619499
Alignment:
Q  66 cagggaccaataccaaaactgggcgaaagtgcagggactaaacacacat 114  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  8619451 cagggaccaataccaaaattgggtgaaagtgcagggactaaacgcacat 8619499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 8618794 - 8618688
Alignment:
Q  6 gaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagggacta 105  Q
    ||||||||||||||||  |||||| |||||| | || |||||| |||||        |||||| |||||||| ||||| |||  ||||||||||||||||    
T  8618794 gaaggactaaagccaa--gttttacaaagtgtaaggcccaatgtcaaacaaaaaaaagcgcagagaccaatatcaaaattggatgaaagtgcagggacta 8618697  T
Q  106 aacacacat 114  Q
    |||||||||    
T  8618696 aacacacat 8618688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 32780957 - 32780905
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaa 53  Q
    |||| ||| ||||||| |||||||||||| ||| |||||||||||||||||||    
T  32780957 taacagaatgactaaaaccaaaagttttacaaactgcagggaccaatgccaaa 32780905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 32780922 - 32780873
Alignment:
Q  65 gcagggaccaataccaaaactgggcgaaagtgcagggactaaacacacat 114  Q
    |||||||||||| ||||||  ||| |||||||||||||| ||||||||||    
T  32780922 gcagggaccaatgccaaaatggggtgaaagtgcagggaccaaacacacat 32780873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 39116742 - 39116629
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||| |||| |||||| ||||||||||||||||    
T  39116742 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaagcgtagggatcaatgccaaaattgggcgaaagtgcagg 39116643  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  39116642 gactaaacacacat 39116629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 7889823 - 7889936
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||        | | ||||||||||  ||||||||||||||||||||||    
T  7889823 taacggaaggactaaagccaaaagttttagaaagtgcaaggatcaatgccaaacaaaaaaaagtgtagggaccaatgtcaaaactgggcgaaagtgcagg 7889922  T
Q  101 gactaaacacacat 114  Q
    ||||||||||||||    
T  7889923 gactaaacacacat 7889936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 7888852 - 7888740
Alignment:
Q  2 aacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcaggg 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         || |||||||||| |||||| || |||||||||||| |    
T  7888852 aacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaacaaaaaaaaacgtagggaccaatgccaaaagtgagcgaaagtgcagag 7888753  T
Q  102 actaaacacacat 114  Q
    |||||||||||||    
T  7888752 actaaacacacat 7888740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 39117559 - 39117665
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||         ||| |||||||||| | |||||| ||||||||||||||    
T  39117559 taacggaaggactaaagccaaaaattttagaaagtgcagggactaatgccaaataaaaaaaagcgtagggaccaatgctaaaacttggcgaaagtgcagg 39117658  T
Q  101 gactaaa 107  Q
    |||||||    
T  39117659 gactaaa 39117665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10635298 - 10635247
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaa 52  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10635298 taacggaaggactaaagccaaaagttttagaaagtgcaggtaccaatgccaa 10635247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 13101834 - 13101787
Alignment:
Q  7 aaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaac 54  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  13101834 aaggactaaaaccaaaagttttacaaaatgcagggaccaatgccaaac 13101787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 9177443 - 9177492
Alignment:
Q  65 gcagggaccaataccaaaactgggcgaaagtgcagggactaaacacacat 114  Q
    ||||||||| ||||||||| | || |||||||||||||| ||||||||||    
T  9177443 gcagggaccgataccaaaattaggtgaaagtgcagggaccaaacacacat 9177492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9177408 - 9177460
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaa 53  Q
    |||| ||||||||||| |||||||||||| ||| |||||||||| || |||||    
T  9177408 taacagaaggactaaaaccaaaagttttacaaactgcagggaccgataccaaa 9177460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13267 - 13377
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaaccnnnnnnngcgcagggaccaataccaaaactgggcgaaagtgcagg 100  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||| ||||||         | ||||||||||  |||||||| || |||||||||||    
T  13267 taacggaaggactaaagccaaaagttttacaaagtgtagggatcaataccaaacaaaaaaaaactcagggaccaaagccaaaactaggtgaaagtgcagg 13366  T
Q  101 gactaaacaca 111  Q
    |||||||||||    
T  13367 gactaaacaca 13377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 12505 - 12460
Alignment:
Q  69 ggaccaataccaaaactgggcgaaagtgcagggactaaacacacat 114  Q
    |||||||||||||||||| |||||||| |||  |||||||||||||    
T  12505 ggaccaataccaaaactgtgcgaaagttcagcaactaaacacacat 12460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 53247 - 53299
Alignment:
Q  1 taacggaaggactaaagccaaaagttttagaaagtgcagggaccaatgccaaa 53  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  53247 taacagaaggactaaaggcaaaagttttacaaagtgcagggaccaataccaaa 53299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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