View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11870_low_58 (Length: 237)
Name: NF11870_low_58
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_58 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 30831042 - 30830906
Alignment:
| Q |
1 |
ttaaatatatgacatatgattttgggtttcttgattaactttattcatttacttatatataaacaaaggttgttaacatttctagtccttccttcaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30831042 |
ttaaatatatgacatatgattttgggtttcttgattaactttatacatttatttatata--aacaaaggttgttaacatttatagtccttccttcaaaaa |
30830945 |
T |
|
| Q |
101 |
taaaagaatttagtccagtgatttgataactacatctaacattt |
144 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30830944 |
aaa-----tttagtccagtgatttgataactacatctaacattt |
30830906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 30829123 - 30829071
Alignment:
| Q |
170 |
attatacaacagctgataaaccatcgaatcagtctttccttgttggagaaagt |
222 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30829123 |
attatacaacagctgataaaccatccaatcagtctttccttgttggagaaagt |
30829071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University