View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_low_64 (Length: 224)

Name: NF11870_low_64
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_low_64
NF11870_low_64
[»] chr6 (4 HSPs)
chr6 (151-197)||(10580453-10580499)
chr6 (63-106)||(392382-392425)
chr6 (8-76)||(6414372-6414440)
chr6 (10-47)||(392351-392388)
[»] chr4 (2 HSPs)
chr4 (118-165)||(21835696-21835743)
chr4 (1-46)||(21835829-21835874)
[»] chr8 (1 HSPs)
chr8 (118-192)||(36768788-36768862)


Alignment Details
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 10580499 - 10580453
Alignment:
Q  151 tttgaactgcaaccaccttcattggatctcaagtaacctgtaggcat 197  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  10580499 tttgaactgcaaccaccttcattggatctccagtaacctgtaggcat 10580453  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 392382 - 392425
Alignment:
Q  63 ccaacaattataacgaaataaaggaaattcttaggcactcagtt 106  Q
    |||||||| ||||| |||||||||||||||||||||||||||||    
T  392382 ccaacaataataacaaaataaaggaaattcttaggcactcagtt 392425  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 6414372 - 6414440
Alignment:
Q  8 tcaacaaatccttttggaaaactacacattaatccaacaaaacaaacttcttgcaccaacaattataac 76  Q
    |||||||||| |||||||||||||||||||||| | ||| || |||||| |||| | || |||||||||    
T  6414372 tcaacaaatcattttggaaaactacacattaatacgacagaataaactttttgcgcaaaaaattataac 6414440  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 392351 - 392388
Alignment:
Q  10 aacaaatccttttggaaaactacacattaatccaacaa 47  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  392351 aacaaatccttttggaaaactacacatcattccaacaa 392388  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 21835743 - 21835696
Alignment:
Q  118 ctatttcttcaattccaaacctgcgaaaatttctttgaactgcaacca 165  Q
    ||||||||| |||||||||| |||  ||||||||||||||||||||||    
T  21835743 ctatttctttaattccaaacttgcttaaatttctttgaactgcaacca 21835696  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21835874 - 21835829
Alignment:
Q  1 ttgccactcaacaaatccttttggaaaactacacattaatccaaca 46  Q
    |||||| |||||| ||  ||||||||||||||||||||||||||||    
T  21835874 ttgccaatcaacatatgattttggaaaactacacattaatccaaca 21835829  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 36768862 - 36768788
Alignment:
Q  118 ctatttcttcaattccaaacctgcgaaaatttctttgaactgcaaccaccttcattggatctcaagtaacctgta 192  Q
    ||||||||| |||||||||| |||  |||||||| || |||||||||| ||||  ||| |||| |||||||||||    
T  36768862 ctatttctttaattccaaacttgccgaaatttctctggactgcaaccatcttccctgggtctccagtaacctgta 36768788  T

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