View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_9 (Length: 566)
Name: NF11870_low_9
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 15 - 552
Target Start/End: Complemental strand, 34248533 - 34247993
Alignment:
| Q |
15 |
atgaaggacacattggtgaagcgttttgggtttgatcatgccaatattcagcttctcactgatgat---cctaaaaactcttcatcaactatgccaactg |
111 |
Q |
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| T |
34248533 |
atgaaggacacattggtgaagcgttttgggtttgatcatgccaatattcagcttctcactgatgatgatcctaaaaactcttcatcaactatgccaactg |
34248434 |
T |
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| Q |
112 |
gtgctaacattaaacaagcattatcaagcatggttgataaagctgaagcaggggatgtgctttattttcattatagtggacatggaactaggattccttc |
211 |
Q |
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| T |
34248433 |
gtgctaacattaaacaagcattatcaagcatggttgataaagctgaagcaggggatgtgctttattttcattatagtggacatggaactaggattccttc |
34248334 |
T |
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| Q |
212 |
caagatacatggacatccttttcgacatgaagaagctattgtgccttgtgacttcaatcttatcactggtttgtatcaacttctctcgtgataaaactta |
311 |
Q |
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| T |
34248333 |
caagatacatggacatccttttcgacatgaagaagctattgtgccttgtgacttcaatcttatcactggtttgtatcaacttctctcttgataaaactta |
34248234 |
T |
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| Q |
312 |
tgtcgcgatttagttacaaaattgtttatgatgttactagctcaagttcatatgnnnnnnnntcacatttaaaattgcagagtagtctatgtgaactata |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34248233 |
tgtcgcgatttagttacaaaattgtttatgatgttactagctcgagttcatatgaaaaaaaatcacatttaaaattgcagagtagtctatgtgaactata |
34248134 |
T |
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| Q |
412 |
gaattttcttagatatttgaactatgtgacaacccaaatgccatttagaaactatgtataaaactaatacttttatttctatcattgtcgtatactgtat |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34248133 |
gaattttcttagatatttgaactatgtgacaacccaaatgccatttagaaactatgtataaaactaatacttttatttctatcattgtcgtatactgtat |
34248034 |
T |
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| Q |
512 |
agatttggacttcagacaactagtaaatcggattccaaaag |
552 |
Q |
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| T |
34248033 |
agatttggacttcagacaactagtaaatcggattccaaaag |
34247993 |
T |
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