View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_high_11 (Length: 450)
Name: NF11871_high_11
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 56469152 - 56468728
Alignment:
| Q |
15 |
atgaacaagctgagggcacatgactttggaaagccaggttcggggaaagggataagactggatgatttaaagatatcagaggaagagatggaaatgtatg |
114 |
Q |
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| T |
56469152 |
atgaacaagctgagggcacatgactttggaaagccgggttcggggaaagggataagactggatgatttaaagatatcagaggaagagatggaaatgtatg |
56469053 |
T |
|
| Q |
115 |
ttgatatgcatcatattacaaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagcttggcctcaggca |
214 |
Q |
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| T |
56469052 |
ttgatatgcatcatattaccaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagcttggcctcaggca |
56468953 |
T |
|
| Q |
215 |
tttgttggtggtgccaaagacatccggagtaagaaacaatatactattacaatcttgaataaacatatccatgtatttaagtatacattggctgactttg |
314 |
Q |
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| T |
56468952 |
tttgttggtggtgccaaagacatccggagtaagaaacaatatactattacaatcttgaataaacatatccatgcatttaagtatacattggctgactttg |
56468853 |
T |
|
| Q |
315 |
caatcattaattacaattatccttgtttgttggctgggagtgagtattaactaacaattactaatatttgtggttgttatgcagagacctccaattgtgg |
414 |
Q |
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| T |
56468852 |
caatcattaattacaattatccttgtatgttggctgggagtgagtattaactaacaattactaatatttgtggttgttatgcagagacctccaattgtgg |
56468753 |
T |
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| Q |
415 |
gaatcttgacaaggcacgacttcat |
439 |
Q |
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| T |
56468752 |
ggatcttgacaaggcacgacttcat |
56468728 |
T |
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Back To:
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 247
Target Start/End: Original strand, 155492 - 155640
Alignment:
| Q |
99 |
gagatggaaatgtatgttgatatgcatcatattacaaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtg |
198 |
Q |
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||||||||||||||||||||| | |||| || ||||| | || | ||||| ||||| |||||||||||||| || ||| |||| |||| || || | |
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| T |
155492 |
gagatggaaatgtatgttgatcttcatccaatcacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttctgtttcggg |
155591 |
T |
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| Q |
199 |
agcttggcctcaggcatttgttggtggtgccaaagacatccggagtaag |
247 |
Q |
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| T |
155592 |
agcttggactcaggcatttgctagttgtgcctaagaaaccaggagtaag |
155640 |
T |
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