View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11871_high_15 (Length: 417)

Name: NF11871_high_15
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11871_high_15
NF11871_high_15
[»] chr8 (2 HSPs)
chr8 (22-146)||(31426775-31426899)
chr8 (290-348)||(19781447-19781505)
[»] chr4 (2 HSPs)
chr4 (290-348)||(34236150-34236208)
chr4 (296-348)||(4859900-4859952)
[»] chr7 (1 HSPs)
chr7 (290-347)||(47537397-47537454)
[»] chr1 (2 HSPs)
chr1 (295-347)||(27908889-27908941)
chr1 (295-346)||(27160391-27160442)
[»] scaffold0007 (1 HSPs)
scaffold0007 (295-349)||(246603-246657)
[»] chr6 (2 HSPs)
chr6 (290-348)||(32800174-32800232)
chr6 (290-351)||(27082278-27082339)
[»] chr2 (1 HSPs)
chr2 (290-348)||(1870578-1870636)
[»] chr5 (1 HSPs)
chr5 (198-274)||(3600151-3600227)
[»] chr3 (1 HSPs)
chr3 (290-350)||(19202418-19202478)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 31426775 - 31426899
Alignment:
Q  22 caacacctcacgacccggcaaagacggtctcattgacccgactacttcaaataattaattcttttcggagttgtgacctaacattaaattgagaaattat 121  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||| |||||||||    
T  31426775 caacacctcaccacccggcaaggacgatctcattgacccgactacttcaagtaattaattcttttgtgagttgtgacccaacattaaattaagaaattat 31426874  T
Q  122 tatgtctcaattataaacaacattt 146  Q
    |||||||||||||||||||||||||    
T  31426875 tatgtctcaattataaacaacattt 31426899  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 19781447 - 19781505
Alignment:
Q  290 aaaaattacttgttttagttgtttaactaatgccctaagggcactgtttatcattctcc 348  Q
    |||||||||||||||| |||| ||||| ||||||| | | |||||||||| ||||||||    
T  19781447 aaaaattacttgttttggttgcttaaccaatgccccaggagcactgtttaacattctcc 19781505  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 34236208 - 34236150
Alignment:
Q  290 aaaaattacttgttttagttgtttaactaatgccctaagggcactgtttatcattctcc 348  Q
    |||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||    
T  34236208 aaaaattacttgttttggttgtttaaccaatgccctaagagcgctgtttatcattctcc 34236150  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 4859952 - 4859900
Alignment:
Q  296 tacttgttttagttgtttaactaatgccctaagggcactgtttatcattctcc 348  Q
    ||||| |||| |||||||||| |||||||| | ||||||||||| ||||||||    
T  4859952 tacttattttggttgtttaaccaatgccctgatggcactgtttagcattctcc 4859900  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 47537454 - 47537397
Alignment:
Q  290 aaaaattacttgttttagttgtttaactaatgccctaagggcactgtttatcattctc 347  Q
    |||| |||| ||||||||||| |||||||||| ||||||||||| ||||| |||||||    
T  47537454 aaaagttacctgttttagttgcttaactaatgtcctaagggcaccgtttaacattctc 47537397  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 27908941 - 27908889
Alignment:
Q  295 ttacttgttttagttgtttaactaatgccctaagggcactgtttatcattctc 347  Q
    |||||| |||||||| |||||| |||||| ||||||||||||||| |||||||    
T  27908941 ttacttattttagttatttaaccaatgccttaagggcactgtttaacattctc 27908889  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 27160391 - 27160442
Alignment:
Q  295 ttacttgttttagttgtttaactaatgccctaagggcactgtttatcattct 346  Q
    ||||||||||| |||||||||| |||| | | ||||||||||||||||||||    
T  27160391 ttacttgttttggttgtttaaccaatgtcttgagggcactgtttatcattct 27160442  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 246603 - 246657
Alignment:
Q  295 ttacttgttttagttgtttaactaatgccctaagggcactgtttatcattctcca 349  Q
    |||||| |||||||  |||||||||||||||||||||| || ||| |||||||||    
T  246603 ttacttattttagtactttaactaatgccctaagggcaatggttagcattctcca 246657  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 32800232 - 32800174
Alignment:
Q  290 aaaaattacttgttttagttgtttaactaatgccctaagggcactgtttatcattctcc 348  Q
    ||||||||||  |||| |||| ||||| |||||||| ||||||||||||| ||||||||    
T  32800232 aaaaattactacttttggttgcttaacaaatgccctgagggcactgtttagcattctcc 32800174  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 27082339 - 27082278
Alignment:
Q  290 aaaaattacttgttttagttgtttaactaatgccctaagggcactgtttatcattctccatt 351  Q
    |||| ||||||||||| |||||||||| |||| |||  ||||||| |||| |||||||||||    
T  27082339 aaaatttacttgttttggttgtttaaccaatgtccttggggcactatttagcattctccatt 27082278  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 1870578 - 1870636
Alignment:
Q  290 aaaaattacttgttttagttgtttaactaatgccctaagggcactgtttatcattctcc 348  Q
    |||| ||||||||||| |||| ||||| |||||||  ||||||||||||| ||||||||    
T  1870578 aaaagttacttgtttttgttgcttaaccaatgccccgagggcactgtttagcattctcc 1870636  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 3600227 - 3600151
Alignment:
Q  198 aatggttaagaaaactacagatgaaatattcgtcttgaaattatacgatatgacttttgattagataataattacat 274  Q
    ||||||||||||||||| | || ||||||| ||||||||| |||| | | ||| |||| ||||  ||||||||||||    
T  3600227 aatggttaagaaaactataaataaaatatttgtcttgaaaatataagttttgaattttaattaagtaataattacat 3600151  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 19202418 - 19202478
Alignment:
Q  290 aaaaattacttgttttagttgtttaactaatgccctaagggcactgtttatcattctccat 350  Q
    |||| ||| |||||||||||| ||||| |||||||| ||| || |||||| ||||||||||    
T  19202418 aaaagttaattgttttagttgcttaaccaatgccctgaggccattgtttaacattctccat 19202478  T

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