View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_high_19 (Length: 361)
Name: NF11871_high_19
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 5117531 - 5117191
Alignment:
| Q |
13 |
cctgtaaaaaagttattactgaaatataacctttgtaacaatgtgcagttaccaatcgatcgtggaagagttccgtttaaattgttactaagaaggctaa |
112 |
Q |
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| T |
5117531 |
cctgtaaaaaagttattagtgaaatataacttttgtaaaaatgtgcagttgccaatcgatcgtggaagagttccatttaaattgttactacgaaggctga |
5117432 |
T |
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| Q |
113 |
gcactctcaaagaagagatgttgaagagggacaatggaatttcacctgtgtttaaacataataagttt-aaattatgatttgatgataattattagctaa |
211 |
Q |
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| T |
5117431 |
tcactctcaaagaagagatgttgaagagggacaatggaatttcacctgtgtttaaacataaaaagtttaaaattatgatttgatgata---attagctaa |
5117335 |
T |
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| Q |
212 |
aggagaaaacttaaaaacagtacatcctattgccaactgataacataaaaactgc----gtttcttccggtggacaaacttcatgctcatcaaacaacca |
307 |
Q |
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| T |
5117334 |
aggagaaaacttaaaaacagtacatcctattgccaactgataacataaaaattgcgtttgtttcttccgttggagaaacttcatgctcatcaaacaacca |
5117235 |
T |
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| Q |
308 |
ggactgaaattgtattgcaacttgagattaatttccttgtttct |
351 |
Q |
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| T |
5117234 |
ggactgaaattgtattgcaacttgagattaatttccttgtttct |
5117191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 5099775 - 5099691
Alignment:
| Q |
83 |
ttccgtttaaattgttactaagaaggctaagcactctcaaagaagagatgttgaagagggacaatggaatttcacctgtgtttaa |
167 |
Q |
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| T |
5099775 |
ttccatttaaattgttcttagtaaggctgatctctctcaaagaagagatgttgaagagggataatggaatttcacctgtatttaa |
5099691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 5082467 - 5082553
Alignment:
| Q |
75 |
tggaagagttccgtttaaattgttactaagaaggctaagcactctcaaagaagagatgttgaagagggacaatggaatttcacctgt |
161 |
Q |
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| T |
5082467 |
tggaagagttccatttaaattgttaccatcaaggctgatctctctcaaagaagagatgctgaagagggatacaggaatttcacctgt |
5082553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 5082356 - 5082396
Alignment:
| Q |
39 |
taacctttgtaacaatgtgcagttaccaatcgatcgtggaa |
79 |
Q |
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| T |
5082356 |
taacgtttgtaacaatgtgcagttgccaatcgatcgtggaa |
5082396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 14414448 - 14414533
Alignment:
| Q |
74 |
gtggaagagttccgtttaaattgttactaagaaggctaagcactctcaaagaagagatgttgaagagggacaatggaatttcacct |
159 |
Q |
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| T |
14414448 |
gtggaagaattccatttaaattgttacccaaaaggctgatcactctcaacgaagagatgttgaagagggagattggaatttcacct |
14414533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 14414312 - 14414378
Alignment:
| Q |
13 |
cctgtaaaaaagttattactgaaatataacctttgtaacaatgtgcagttaccaatcgatcgtggaa |
79 |
Q |
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| T |
14414312 |
cctgtaaaaaagttattatataaatataactcttgtaacgatgtgcagttgccaattgatcgtggaa |
14414378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 16877747 - 16877703
Alignment:
| Q |
116 |
ctctcaaagaagagatgttgaagagggacaatggaatttcacctg |
160 |
Q |
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| T |
16877747 |
ctctcaaagaagtgatattgaagagggagaatggaatttcacctg |
16877703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 45621275 - 45621245
Alignment:
| Q |
318 |
tgtattgcaacttgagattaatttccttgtt |
348 |
Q |
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| T |
45621275 |
tgtattgcaacttgagattaatttccttgtt |
45621245 |
T |
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