View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_high_20 (Length: 338)
Name: NF11871_high_20
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 35094508 - 35094192
Alignment:
| Q |
6 |
agcagagaaggagatagcaagttgtcctttgtgagggaagaagtatcagcacaatttgatttgcaagatcttttgagagccgctgctgagatattaggaa |
105 |
Q |
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| T |
35094508 |
agcagaaaaggagatagcaagttgtcctttgtgagggaagaagtatcagcacaatttgatttgcaagatcttttgagagccgctgctgagatattaggaa |
35094409 |
T |
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| Q |
106 |
gtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaaaagatacaaacaaatgaacaatgttaataggccagagtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094408 |
gtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaaaagatacaaacaaatgaacaatgttaataggccagagtt |
35094309 |
T |
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| Q |
206 |
tcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatcaccgac |
305 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094308 |
tcaagagcacatgagaagactaggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatcaccgac |
35094209 |
T |
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| Q |
306 |
tttgttcccaatggaag |
322 |
Q |
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| T |
35094208 |
tttgttcccaatggaag |
35094192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 42509285 - 42509397
Alignment:
| Q |
200 |
agagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatc |
299 |
Q |
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||||||||||||||| |||||||| | ||||||||||| ||||| ||| | ||||||| || |||||||| || | || ||| ||||| || || | |
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| T |
42509285 |
agagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttgttgcttactattatagaaaagaagagaagctcttggtt |
42509384 |
T |
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| Q |
300 |
accgactttgttc |
312 |
Q |
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| T |
42509385 |
accgactttgttc |
42509397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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