View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11871_high_22 (Length: 302)

Name: NF11871_high_22
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11871_high_22
NF11871_high_22
[»] chr8 (4 HSPs)
chr8 (9-302)||(27813899-27814190)
chr8 (9-127)||(25641050-25641168)
chr8 (38-123)||(4756122-4756207)
chr8 (25-96)||(4743905-4743976)
[»] chr4 (1 HSPs)
chr4 (9-127)||(53302423-53302541)
[»] chr7 (2 HSPs)
chr7 (9-127)||(4682990-4683108)
chr7 (38-79)||(1528192-1528233)
[»] chr2 (4 HSPs)
chr2 (9-127)||(30269097-30269215)
chr2 (9-127)||(31332013-31332131)
chr2 (9-127)||(31338742-31338861)
chr2 (18-87)||(31481979-31482046)
[»] chr6 (1 HSPs)
chr6 (9-127)||(30824996-30825114)
[»] chr3 (3 HSPs)
chr3 (9-127)||(7403992-7404110)
chr3 (17-127)||(36086937-36087047)
chr3 (17-61)||(16456650-16456694)
[»] chr5 (4 HSPs)
chr5 (9-127)||(5076041-5076159)
chr5 (9-127)||(37190451-37190569)
chr5 (9-127)||(7413064-7413182)
chr5 (67-127)||(37190558-37190618)
[»] chr1 (3 HSPs)
chr1 (25-112)||(47694191-47694278)
chr1 (222-302)||(43323600-43323680)
chr1 (131-186)||(43323684-43323740)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 27813899 - 27814190
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  27813899 agcatagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattgtaccataaagg 27813998  T
Q  109 ttgattgaagcattttatctggttaggatgacatactatatcattagtaaaataatattaagatcacgagtgaggtatattgtgtgcaccctttaatttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  27813999 ttgattgaagcattttatctggttaggatgacatactatatcattagtaaaataatattaagatcacgagtgagg--tattgtgtgcaccctttaatttt 27814096  T
Q  209 tgaaactctttaagtaggtgctttggtgcaaccttcatggagtcaataataaactctcctgtgttgaaacctgagatgaatgggcaatataatc 302  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27814097 cgaaactctttaagtagatgctttggtgcaaccttcatggagtcaataataaactctcctgtgttgagacctgagatgaatgggcaatataatc 27814190  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 25641050 - 25641168
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||    
T  25641050 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaagg 25641149  T
Q  109 ttgattgaagcattttatc 127  Q
    |||||||||||||||||||    
T  25641150 ttgattgaagcattttatc 25641168  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 4756122 - 4756207
Alignment:
Q  38 agattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgattgaagcattt 123  Q
    ||||||||||||||||| ||||||| || ||||||||||||| ||| ||| ||||||||| | ||||||| ||| || ||||||||    
T  4756122 agattagagaagtaaatcaaatttgattgaagcattttatcaaacagaaaacaagcattgtaccataaagattgtttaaagcattt 4756207  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 4743905 - 4743976
Alignment:
Q  25 aatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcatt 96  Q
    ||||||||| ||||||||||||||||||||| ||| ||||| |||||||| |||| ||| ||| ||||||||    
T  4743905 aatcacattactgagattagagaagtaaatacaatctggttgaagcatttcatcaaacagaaaacaagcatt 4743976  T

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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 53302423 - 53302541
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||    
T  53302423 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcattgtaccataaagg 53302522  T
Q  109 ttgattgaagcattttatc 127  Q
    |||||||||||||||||||    
T  53302523 ttgattgaagcattttatc 53302541  T

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Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 4683108 - 4682990
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||    
T  4683108 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaagg 4683009  T
Q  109 ttgattgaagcattttatc 127  Q
    |||||||||||||||||||    
T  4683008 ttgattgaagcattttatc 4682990  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 1528233 - 1528192
Alignment:
Q  38 agattagagaagtaaataaaatttggttcaagcattttatca 79  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  1528233 agattaaagaagtaaataaaatttggttgaagcattttatca 1528192  T

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Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 30269097 - 30269215
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||    
T  30269097 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcattgtaccataaagg 30269196  T
Q  109 ttgattgaagcattttatc 127  Q
    | |||||||||||||||||    
T  30269197 tagattgaagcattttatc 30269215  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 31332131 - 31332013
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||    
T  31332131 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaagg 31332032  T
Q  109 ttgattgaagcattttatc 127  Q
    |||||||||||||||||||    
T  31332031 ttgattgaagcattttatc 31332013  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 31338861 - 31338742
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcat-aaag 107  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||| ||||    
T  31338861 agcatagatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaaag 31338762  T
Q  108 gttgattgaagcattttatc 127  Q
    ||||||||||||||||||||    
T  31338761 gttgattgaagcattttatc 31338742  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 31481979 - 31482046
Alignment:
Q  18 gcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaa 87  Q
    |||| ||||||||||| ||||  ||||||||||||||||||||||| | ||||||||||||| |||||||    
T  31481979 gcagaagaatcacattactga--ttagagaagtaaataaaatttggcttaagcattttatcaaacaaaaa 31482046  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 30824996 - 30825114
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||  ||||| |||||||||||||||||||||| | ||||||||    
T  30824996 agcatagatgcaggagaatcacattgatgagattagattagtaaataaaatttggttcactcatttgatcagacaaaaatcaagcattgtaccataaagg 30825095  T
Q  109 ttgattgaagcattttatc 127  Q
    |||||||||||||||||||    
T  30825096 ttgattgaagcattttatc 30825114  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 7404110 - 7403992
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||| || | ||||||||    
T  7404110 agcatagatgcaggagaatcacatttctgagattagaggagtaaataatatttggttcaagcattttatcagacaaacattaagcactgtaccataaagg 7404011  T
Q  109 ttgattgaagcattttatc 127  Q
    |||||||||||||||||||    
T  7404010 ttgattgaagcattttatc 7403992  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 36086937 - 36087047
Alignment:
Q  17 tgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcat-aaaggttgattg 115  Q
    ||||| ||||||| ||| ||||||||||| ||||||| ||||||||||| ||||||||||||| ||| ||| || | |||| | ||| |||| ||| |||    
T  36086937 tgcagaagaatcagattactgagattaga-aagtaaacaaaatttggttgaagcattttatcaaacataaaacatgaattgtaccataaaagtttggttg 36087035  T
Q  116 aagcattttatc 127  Q
    ||||||||||||    
T  36087036 aagcattttatc 36087047  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 16456694 - 16456650
Alignment:
Q  17 tgcaggagaatcacattgctgagattagagaagtaaataaaattt 61  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  16456694 tgcaggagaatcacattactaagattagagaagtaaataaaattt 16456650  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 5076159 - 5076041
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| |||||| ||||||||||||| | ||  || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||    
T  5076159 agcatagatgctggagaatcacattacagatttttgagaagtaaataaaatttggttcaagcattttatcaaacaaaaatcaagcattgtaccataaagg 5076060  T
Q  109 ttgattgaagcattttatc 127  Q
    |||||||| ||||||||||    
T  5076059 ttgattgaggcattttatc 5076041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 37190451 - 37190569
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| |||||| ||||||||||||| | || ||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||||| | ||||||||    
T  37190451 agcatagatgctggagaatcacattacagatattcgagaagtaaataaaatttagttcaaacattttatcaaacaaaaatcaagcattgtaccataaagg 37190550  T
Q  109 ttgattgaagcattttatc 127  Q
    |||||||||||||||||||    
T  37190551 ttgattgaagcattttatc 37190569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 7413064 - 7413182
Alignment:
Q  9 agcagagatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaagg 108  Q
    |||| |||||| ||||||||||||| |  | ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | ||||||||    
T  7413064 agcatagatgctggagaatcacattacaaatattcgagaagtaaaaaaaatttggttcaagcattttatcaaacaaaaatcaagcattgtaccataaagg 7413163  T
Q  109 ttgattgaagcattttatc 127  Q
    |||||||| ||||||||||    
T  7413164 ttgattgaggcattttatc 7413182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 37190558 - 37190618
Alignment:
Q  67 aagcattttatcagacaaaaatcaagcattggatcataaaggttgattgaagcattttatc 127  Q
    ||||||||||||| ||| ||| |||||||||  |||||||| ||  |||||||||||||||    
T  37190558 aagcattttatcaaacacaaaacaagcattgtgtcataaagtttagttgaagcattttatc 37190618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 47694278 - 47694191
Alignment:
Q  25 aatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttga 112  Q
    ||||||||| | ||||||||||||||||||||||||||||  ||||||||||||| ||| |||  | |||||| | ||||||| ||||    
T  47694278 aatcacattacggagattagagaagtaaataaaatttggtcgaagcattttatcaaacacaaaagatgcattgtaccataaagtttga 47694191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 43323680 - 43323600
Alignment:
Q  222 gtaggtgctttggtgcaaccttcatggagtcaataataaactctcctgtgttgaaacctgagatgaatgggcaatataatc 302  Q
    |||| ||||||| |||| ||||| |||||||||||||||||||| | |  |||| |||||||| ||||| |||||||||||    
T  43323680 gtagatgctttgatgcatccttcctggagtcaataataaactcttccgcattgagacctgagaagaatgagcaatataatc 43323600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 43323740 - 43323684
Alignment:
Q  131 ttaggatgacatactatatcattagt-aaaataatattaagatcacgagtgaggtat 186  Q
    ||||||||||||||||||||||||   |||||||||||||||||| |||||||||||    
T  43323740 ttaggatgacatactatatcattaacgaaaataatattaagatcatgagtgaggtat 43323684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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