View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_high_24 (Length: 293)
Name: NF11871_high_24
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 33750227 - 33749959
Alignment:
| Q |
10 |
gcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggagaaggaagaagaggagtagttcatgttcatgtttgggaagtggcaggttg |
109 |
Q |
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| T |
33750227 |
gcagagacgatgacagagagttcttgatcggaggtgagtgtagtggcggagaaggaagaagaggagtagttcatgttcatgtttgggaagtggcaggttg |
33750128 |
T |
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| Q |
110 |
tttgtgttggagtttggaatgtttaaggtttagaagatttgatgtttttggaaagtcagagggtggaaatggtttatatacgatttggaactgacatggc |
209 |
Q |
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| T |
33750127 |
tttgtgttggagtttggaatgtttaaggtttagaagatttgatgtttttggaaagtcagagggtggaaatggtttatatacgatttggaactgacatggc |
33750028 |
T |
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| Q |
210 |
-nnnnnnngagccagctgtgcacaccgatcccacacggttcacttttgatctttgaaagggtaaaaact |
277 |
Q |
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| T |
33750027 |
aaaaaaaagagccagctgtgcacaccgatcccacacggttcacttttgatctttgaaagggtaaaaact |
33749959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 33720800 - 33720746
Alignment:
| Q |
10 |
gcagagacgatgacagagagttcttgatcggaagtgagtgtggtgggggagaagg |
64 |
Q |
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|||| ||||||||| ||||||||||||||||| ||||| ||||| | |||||||| |
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| T |
33720800 |
gcagcgacgatgactgagagttcttgatcggaggtgagggtggtagtggagaagg |
33720746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 33718729 - 33718672
Alignment:
| Q |
29 |
gttcttgatcggaagtgagtgtggtgggggagaaggaagaagaggagtagttcatgtt |
86 |
Q |
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| T |
33718729 |
gttcttgatcggaggggagagtggaggaggagaaggaggaagaggagttgttcatgtt |
33718672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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