View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_high_27 (Length: 256)
Name: NF11871_high_27
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 22391020 - 22390842
Alignment:
| Q |
63 |
ttaagcatgatagaaataatcaaaagaaaatgagaataaattcattaatttaaaaatgaacacatgcaattaatgtctgctcccactaattaaaaatatc |
162 |
Q |
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| T |
22391020 |
ttaagcatgatagaaataatcaaaagaaaatgagaataaattcattaatttaaaaatgaacacatacaattaatgtctgctcccactaattaaaaatatc |
22390921 |
T |
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| Q |
163 |
aaaggactttacaattcccatattttcaacatgttttgtaaatataatcggcctaagccctttagttaatggatctgca |
241 |
Q |
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| T |
22390920 |
aaaggactttacaattcccatattttcaacatgttttgtaaatataatcggcctaagccctttagttaatggatctgca |
22390842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 22391082 - 22391046
Alignment:
| Q |
11 |
cagagacaaatctcaaataaaatttccattagaaata |
47 |
Q |
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| T |
22391082 |
cagagacaaatctcaaataaaatttccattagaaata |
22391046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 42256305 - 42256272
Alignment:
| Q |
11 |
cagagacaaatctcaaataaaatttccattagaa |
44 |
Q |
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| T |
42256305 |
cagagacaaatctcaaataaaatttccattagaa |
42256272 |
T |
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