View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_high_30 (Length: 250)
Name: NF11871_high_30
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_high_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 25816829 - 25816587
Alignment:
| Q |
8 |
caaaggtaaagtttccattccctacattaatatgtcatggagacacatcatcttatggtactaaacaaaacataagggttatataacacactaaaacaaa |
107 |
Q |
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| T |
25816829 |
caaaggtaaagtttccattccctacattaatatgtcaaggagacacatcatcttgtggtactaaacaaaacataagggttctataacacgctaaaacaaa |
25816730 |
T |
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| Q |
108 |
aagacaagacaaaagatagattctgttaagttacatgttgttcaagctcgagactttttcaccttattccctttactccctctactactgttatgtgcag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25816729 |
aagacaagacaaaagatagattctgttaagttacatgttgttcaagctcgagactttttcaccttattccctttactccctctactactgttatgtgtag |
25816630 |
T |
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| Q |
208 |
catacaatgtattctgtaaaccacttcctttaccatgttccat |
250 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25816629 |
catgcaatgtattctgtaaaccacttcctttaccatgttccat |
25816587 |
T |
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