View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11871_high_36 (Length: 239)
Name: NF11871_high_36
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_high_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 5117603 - 5117817
Alignment:
| Q |
9 |
tttctctatgatatgtgatgttaggtttcataccaatggagattggccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcc |
108 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
5117603 |
tttctctatgatatgtgatgttaggttcaataccaaaggagattggccatctcaatcaacttcagcttctatttatgaaaaataacagcttgagtgggcc |
5117702 |
T |
|
| Q |
109 |
tattccttcacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggactt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5117703 |
tattccttcacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggactt |
5117802 |
T |
|
| Q |
209 |
cctaacctacaattc |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5117803 |
cctaacctacaattc |
5117817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 5081946 - 5081732
Alignment:
| Q |
5 |
gttgtttctctatgatatgtgatgttaggtttcataccaatggagattggccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtg |
104 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| ||||| | ||| ||||||||||||||| | |
|
|
| T |
5081946 |
gttgtttctcaatgatatgtgattttaggttcgataccaatggagattggcagtctcaatcaacttcagcttctacaaatgggaaataacagcttgagcg |
5081847 |
T |
|
| Q |
105 |
ggcctattccttcacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttgg |
204 |
Q |
| |
|
| |||||||||| || |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
5081846 |
gacctattcctttgaaaatcttcaacatttcaacattggaatatttgcatcttgaacaaaattctttctcaggcatgcttccatcaaatctgggatttgg |
5081747 |
T |
|
| Q |
205 |
acttcctaacctaca |
219 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5081746 |
ccttcctaacctaca |
5081732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 5100040 - 5100255
Alignment:
| Q |
5 |
gttgtttctctatgatatgtgatgttaggtttcataccaatggagattggccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtg |
104 |
Q |
| |
|
||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
5100040 |
gttgtttctttatgatatttgattttaggttcgataccaatggagattggccatctcagtcaacttcaacttctactaatgggaaataacagcttgagtg |
5100139 |
T |
|
| Q |
105 |
ggcctattccttcacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttgg |
204 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||| || |||| |||||| | ||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
5100140 |
gacctattccttcaaaagtcttcaacatttcaacattggaaattttgtatcttgatcaaaattctctctcaggcatgcttccatcaaatttgggatttgg |
5100239 |
T |
|
| Q |
205 |
acttcctaacctacaa |
220 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5100240 |
acttcctaacctacaa |
5100255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 14414251 - 14414038
Alignment:
| Q |
5 |
gttgtttctctatgatatgtgatgttaggtttcataccaatggagattggccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtg |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| |
|
|
| T |
14414251 |
gttgtttctttatgatatgtgatgttaggttcgttaccaatggagattggccatctcaatcaacttcagattctacaaatgtggaataacaacttgagtg |
14414152 |
T |
|
| Q |
105 |
ggcctattccttcacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttgg |
204 |
Q |
| |
|
| |||||||||||| || |||||||||||||||||||| || ||||| ||||| || ||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
14414151 |
gacctattccttcaaaactcttcaacatttcaacattggaaaatttgtttcttggacaaaattctttctcaggcatgcttccatcaaatctcggatttgg |
14414052 |
T |
|
| Q |
205 |
acttcctaacctac |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14414051 |
ccttcctaacctac |
14414038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 16884334 - 16884524
Alignment:
| Q |
30 |
taggtttcataccaatggagattggccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattccttcacaagtcttcaa |
129 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||||| | | ||||||| || ||||||| |
|
|
| T |
16884334 |
taggtttgatacctatggagattggcaatctcaatcaaattcaggttctacaaatgggaaataacagcttgagtggacatgttccttctaaactcttcaa |
16884433 |
T |
|
| Q |
130 |
catttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacctacaa |
220 |
Q |
| |
|
||||||||||||| || |||||| |||||| ||||||||| ||||||||||||||||| | ||| | ||| |||| |||||||| |||||| |
|
|
| T |
16884434 |
catttcaacattggaacatttgcatcttgagctaaattctctctcaggcatgcttccacccaatatgggacttggccttcctaatctacaa |
16884524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University