View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_high_37 (Length: 238)
Name: NF11871_high_37
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 36039433 - 36039555
Alignment:
| Q |
18 |
gaagtgtcaccttacataaaccactttatcacacaaactagcccaggtcccaggacaccaaacatcactcaacaaaactctcaaccacctgctcaactag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36039433 |
gaagtgtcaccttacataaaccactttatcacacaaactagcccaggtcccaggacaccaaacatcactcaacaaaactctcaaccacctactcaactag |
36039532 |
T |
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| Q |
118 |
gaccagccccaaatctatctacc |
140 |
Q |
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|||| |||||||||||||||||| |
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| T |
36039533 |
gaccggccccaaatctatctacc |
36039555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 36039708 - 36039808
Alignment:
| Q |
138 |
accctgtgttagcactaaaagacccaaattggaaaatggaatcttcaagaaagttatagggaagatcaaagtagctcttgaaatttggggtctaactcat |
237 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36039708 |
accctgtgttagcactaaaagacccaaattgaaaaatggaatcttcaagaaagttatagggaagatcaaagtagctgttgaaatttggggtctaactcat |
36039807 |
T |
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| Q |
238 |
c |
238 |
Q |
| |
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| T |
36039808 |
c |
36039808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 1666757 - 1666879
Alignment:
| Q |
18 |
gaagtgtcaccttacataaaccactttatcacacaaactagcccaggtcccaggacaccaaacatcactcaacaaaactctcaaccacctgctcaactag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1666757 |
gaagtgtcaccttacataaaccactttatcacacaaactagcccaagtccaaggacaccaaacatcactcatcaaaactctcaaccacctgctcaactag |
1666856 |
T |
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| Q |
118 |
gaccagccccaaatctatctacc |
140 |
Q |
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||| |||||||||||| ||||| |
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| T |
1666857 |
gactggccccaaatctacctacc |
1666879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 1667079 - 1667117
Alignment:
| Q |
138 |
accctgtgttagcactaaaagacccaaattggaaaatgg |
176 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |
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| T |
1667079 |
accctgtgttagcactaaaagacccgaattggaaaatgg |
1667117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 16090996 - 16091116
Alignment:
| Q |
20 |
agtgtcaccttacataaaccactttatcacacaaactagcccaggtcccaggacaccaaacatcactcaacaaaactctcaaccacctgctcaactagga |
119 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
16090996 |
agtgtcaccttacataaaccattttatcacacaaactagcccaggtccaaggacaccaaacatcactcaacaaaactcacaaccacctactcaactagga |
16091095 |
T |
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| Q |
120 |
ccagccccaaatctatctacc |
140 |
Q |
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|| |||||||||||| ||||| |
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| T |
16091096 |
ccggccccaaatctacctacc |
16091116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 16091320 - 16091354
Alignment:
| Q |
142 |
tgtgttagcactaaaagacccaaattggaaaatgg |
176 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
16091320 |
tgtgttagcactaaaagacccgaattggaaaatgg |
16091354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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