View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11871_high_38 (Length: 236)

Name: NF11871_high_38
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11871_high_38
NF11871_high_38
[»] chr8 (22 HSPs)
chr8 (1-200)||(36039876-36040070)
chr8 (1-111)||(33435794-33435905)
chr8 (1-111)||(43599426-43599540)
chr8 (1-111)||(15010903-15011018)
chr8 (1-111)||(35561574-35561688)
chr8 (1-99)||(15857101-15857201)
chr8 (1-74)||(8559760-8559835)
chr8 (5-111)||(10989120-10989230)
chr8 (5-111)||(45122220-45122329)
chr8 (1-122)||(4196032-4196158)
chr8 (33-112)||(41456419-41456499)
chr8 (45-112)||(8056410-8056477)
chr8 (45-112)||(25186637-25186704)
chr8 (188-235)||(36040068-36040115)
chr8 (48-112)||(26800448-26800512)
chr8 (45-112)||(3895244-3895311)
chr8 (45-112)||(15967988-15968055)
chr8 (48-111)||(15968355-15968418)
chr8 (45-112)||(22188799-22188866)
chr8 (1-57)||(25186737-25186794)
chr8 (1-69)||(39124878-39124946)
chr8 (4-55)||(37537180-37537232)
[»] chr6 (23 HSPs)
chr6 (1-111)||(11316958-11317070)
chr6 (1-112)||(11313464-11313579)
chr6 (1-111)||(29742516-29742628)
chr6 (1-111)||(30526953-30527064)
chr6 (1-111)||(25998932-25999045)
chr6 (28-111)||(24558698-24558782)
chr6 (4-111)||(26098457-26098567)
chr6 (1-111)||(26098663-26098776)
chr6 (1-111)||(19712486-19712598)
chr6 (5-111)||(18494360-18494470)
chr6 (1-111)||(16590090-16590206)
chr6 (1-111)||(16605174-16605290)
chr6 (5-107)||(12124780-12124882)
chr6 (37-111)||(8929960-8930034)
chr6 (11-97)||(15102843-15102931)
chr6 (28-109)||(3713112-3713193)
chr6 (43-99)||(30539362-30539418)
chr6 (1-74)||(15101193-15101268)
chr6 (33-111)||(2904909-2904989)
chr6 (38-91)||(2923119-2923172)
chr6 (50-111)||(16876936-16876999)
chr6 (1-72)||(2923038-2923112)
chr6 (1-111)||(13692250-13692362)
[»] chr5 (27 HSPs)
chr5 (1-111)||(3015499-3015610)
chr5 (1-111)||(39268137-39268248)
chr5 (1-111)||(11632340-11632453)
chr5 (1-111)||(48186-48300)
chr5 (31-111)||(36307832-36307912)
chr5 (1-111)||(34457211-34457325)
chr5 (1-111)||(43490338-43490452)
chr5 (1-107)||(28156149-28156261)
chr5 (1-111)||(2908644-2908758)
chr5 (1-111)||(18107560-18107671)
chr5 (1-111)||(18914243-18914357)
chr5 (1-74)||(13413737-13413812)
chr5 (1-108)||(15510586-15510696)
chr5 (34-111)||(40168951-40169030)
chr5 (12-99)||(4296760-4296850)
chr5 (1-72)||(3763050-3763122)
chr5 (4-108)||(18107745-18107852)
chr5 (110-198)||(42398137-42398223)
chr5 (1-73)||(15287003-15287075)
chr5 (33-111)||(20720459-20720539)
chr5 (54-111)||(36878441-36878498)
chr5 (42-111)||(35527094-35527167)
chr5 (45-111)||(8081046-8081112)
chr5 (49-111)||(37781985-37782049)
chr5 (34-111)||(38376846-38376925)
chr5 (1-54)||(32501181-32501233)
chr5 (1-60)||(37656814-37656874)
[»] chr1 (30 HSPs)
chr1 (1-111)||(43361634-43361746)
chr1 (1-111)||(15391934-15392047)
chr1 (103-202)||(16088303-16088404)
chr1 (5-111)||(38871035-38871144)
chr1 (1-111)||(5325008-5325122)
chr1 (1-111)||(2997138-2997250)
chr1 (33-111)||(11590534-11590613)
chr1 (1-111)||(12314486-12314600)
chr1 (33-111)||(29272975-29273055)
chr1 (33-111)||(29273134-29273214)
chr1 (11-111)||(29413256-29413360)
chr1 (4-107)||(39648962-39649069)
chr1 (1-111)||(24382650-24382765)
chr1 (38-112)||(7171643-7171717)
chr1 (37-111)||(9381015-9381089)
chr1 (5-113)||(22892774-22892886)
chr1 (45-112)||(6238261-6238328)
chr1 (45-112)||(47086191-47086258)
chr1 (1-87)||(6238043-6238128)
chr1 (54-108)||(20429163-20429217)
chr1 (33-111)||(9381214-9381292)
chr1 (48-114)||(22826920-22826986)
chr1 (28-111)||(46098592-46098677)
chr1 (34-99)||(49895275-49895340)
chr1 (5-74)||(22892507-22892578)
chr1 (53-112)||(40073370-40073429)
chr1 (33-99)||(19863096-19863162)
chr1 (1-111)||(24382233-24382349)
chr1 (1-72)||(40073256-40073330)
chr1 (1-111)||(24382442-24382557)
[»] chr4 (27 HSPs)
chr4 (1-111)||(28245903-28246015)
chr4 (1-111)||(17077022-17077133)
chr4 (1-111)||(33629774-33629885)
chr4 (5-111)||(29113359-29113467)
chr4 (111-222)||(1678124-1678237)
chr4 (1-111)||(7806476-7806585)
chr4 (1-113)||(21498437-21498553)
chr4 (4-110)||(400456-400563)
chr4 (103-202)||(1664150-1664251)
chr4 (1-111)||(27634408-27634520)
chr4 (6-111)||(56511412-56511521)
chr4 (5-111)||(1923077-1923185)
chr4 (28-111)||(49380786-49380870)
chr4 (33-111)||(35399325-35399405)
chr4 (1-111)||(12016765-12016880)
chr4 (38-95)||(41743271-41743328)
chr4 (45-112)||(3640319-3640387)
chr4 (48-112)||(14945008-14945072)
chr4 (48-112)||(45684316-45684380)
chr4 (40-111)||(10390394-10390464)
chr4 (1-107)||(11786860-11786969)
chr4 (1-107)||(11799027-11799136)
chr4 (31-111)||(53386192-53386272)
chr4 (1-72)||(3640404-3640478)
chr4 (45-115)||(8305129-8305199)
chr4 (1-53)||(53559387-53559441)
chr4 (48-97)||(40716812-40716861)
[»] chr7 (25 HSPs)
chr7 (1-111)||(6751587-6751699)
chr7 (1-111)||(4258082-4258193)
chr7 (1-111)||(16565009-16565120)
chr7 (1-111)||(16600542-16600653)
chr7 (1-111)||(6813160-6813272)
chr7 (1-111)||(6782946-6783060)
chr7 (11-111)||(258544-258646)
chr7 (1-111)||(9378908-9379022)
chr7 (7-111)||(23396724-23396830)
chr7 (4-113)||(43366316-43366426)
chr7 (1-111)||(33855600-33855713)
chr7 (1-99)||(23821553-23821653)
chr7 (1-111)||(48113908-48114019)
chr7 (28-111)||(23821441-23821524)
chr7 (35-111)||(8681999-8682076)
chr7 (28-111)||(13310329-13310414)
chr7 (4-113)||(40703737-40703850)
chr7 (28-112)||(38948318-38948404)
chr7 (1-112)||(10903359-10903475)
chr7 (32-111)||(43566078-43566157)
chr7 (1-72)||(23390538-23390612)
chr7 (37-99)||(31374892-31374954)
chr7 (1-72)||(30768367-30768440)
chr7 (48-110)||(5266225-5266287)
chr7 (48-112)||(29645928-29645992)
[»] chr2 (24 HSPs)
chr2 (1-112)||(17727311-17727426)
chr2 (5-111)||(32667093-32667201)
chr2 (1-111)||(29695421-29695534)
chr2 (1-111)||(883965-884079)
chr2 (1-111)||(40009882-40009996)
chr2 (1-111)||(33985851-33985964)
chr2 (1-74)||(883683-883758)
chr2 (28-111)||(3435390-3435475)
chr2 (1-69)||(19859989-19860059)
chr2 (1-111)||(12432013-12432127)
chr2 (34-111)||(2464934-2465011)
chr2 (4-113)||(29684124-29684238)
chr2 (39-111)||(39108203-39108275)
chr2 (36-95)||(33277467-33277526)
chr2 (5-57)||(8044632-8044685)
chr2 (6-95)||(22447230-22447322)
chr2 (34-111)||(31761247-31761324)
chr2 (59-111)||(93672-93724)
chr2 (48-112)||(8044721-8044785)
chr2 (13-71)||(25082768-25082827)
chr2 (1-72)||(10485126-10485200)
chr2 (46-112)||(17265146-17265212)
chr2 (59-95)||(93399-93435)
chr2 (46-111)||(2030092-2030159)
[»] chr3 (34 HSPs)
chr3 (1-111)||(9264168-9264282)
chr3 (1-111)||(35015395-35015507)
chr3 (1-111)||(9264375-9264489)
chr3 (5-111)||(39956553-39956663)
chr3 (1-111)||(21833433-21833546)
chr3 (1-111)||(40230516-40230628)
chr3 (8-111)||(51642517-51642624)
chr3 (1-112)||(32034204-32034318)
chr3 (6-111)||(35011772-35011881)
chr3 (1-111)||(22407523-22407637)
chr3 (5-111)||(33909714-33909821)
chr3 (1-99)||(49477454-49477556)
chr3 (1-99)||(50692446-50692548)
chr3 (1-74)||(42258857-42258932)
chr3 (33-111)||(27177527-27177605)
chr3 (37-111)||(37058684-37058760)
chr3 (37-111)||(37223690-37223766)
chr3 (28-111)||(20737135-20737219)
chr3 (38-113)||(4191036-4191113)
chr3 (1-112)||(39268959-39269072)
chr3 (1-113)||(53640047-53640163)
chr3 (48-111)||(12799792-12799855)
chr3 (1-74)||(33798881-33798956)
chr3 (28-111)||(46412144-46412227)
chr3 (32-113)||(12799983-12800065)
chr3 (45-112)||(33799022-33799089)
chr3 (48-111)||(39269416-39269479)
chr3 (45-112)||(40926567-40926634)
chr3 (45-111)||(44145247-44145313)
chr3 (48-112)||(25578857-25578921)
chr3 (48-112)||(40926894-40926958)
chr3 (45-96)||(32516077-32516128)
chr3 (38-111)||(13897387-13897459)
chr3 (1-72)||(19984483-19984558)
[»] scaffold0434 (1 HSPs)
scaffold0434 (1-111)||(13421-13535)
[»] scaffold1138 (1 HSPs)
scaffold1138 (1-107)||(1955-2064)
[»] scaffold0027 (1 HSPs)
scaffold0027 (60-111)||(121439-121490)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 36039876 - 36040070
Alignment:
Q  1 atccgatgtgggacttgggtttttctcatacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaaga 100  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||     
T  36039876 atccgatgtgagatttgggtttttctcatacaccccctcacgcccagcactcttt-----tggtgcgtgaatagatagatggcccttgaattcgacaagc 36039970  T
Q  101 tctgataccatataggaaaatattttgatgtcttttattgatcatcaacatataatatatacgaattactgttgcataatcagaaaactaattatgccta 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||  |||||||||   |||||||||||||||||    
T  36039971 tctgataccatataggaaaatatttcgatgtcttttattgatcatcaacatgtaatatatacgaattacaattgcataatggaaaaactaattatgccta 36040070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33435905 - 33435794
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||||||||||||||||||||||| || ||||||||||||| || |||||||||||| ||||||||||||||   ||| ||||||||||||||||||||    
T  33435905 atccgatgtgggacttgggtttttcccaatacaccccctcacacctagcactctttgggcttggtgcgtgaatcagtaggtggcccttgaattcgacaag 33435806  T
Q  100 atctgataccat 111  Q
     | |||||||||    
T  33435805 ctatgataccat 33435794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 43599540 - 43599426
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| | ||||||||||||||||   ||| |||||||||||||||||    
T  43599540 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactcttttggcttggtgcgtgaataggtttaggtggcccttgaattcgac 43599441  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  43599440 aagctctgataccat 43599426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 15010903 - 15011018
Alignment:
Q  1 atccgatgtgggacttggg-tttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaataga--tagatggcccttgaattcga 95  Q
    ||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||||| |||||||||||||||||  |||  |||||||||||||||    
T  15010903 atccgatgtgggacttggggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaatagatttaggcggcccttgaattcga 15011002  T
Q  96 caagatctgataccat 111  Q
    |||| |||||||||||    
T  15011003 caagctctgataccat 15011018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35561688 - 35561574
Alignment:
Q  1 atccgatgtgggacttgggtttttctcat-acaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| ||  |||||||| |||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  35561688 atccgatgtgggacttgggtttttcccaacacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 35561589  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  35561588 aagctctgataccat 35561574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 15857201 - 15857101
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccc-cctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    ||||||||||||||||| ||||||| || ||||||| ||||||||||| || ||||||| |||||||||||||||| ||| |||||||||||||||||||    
T  15857201 atccgatgtgggacttgagtttttcccaatacacccacctcacgcccaacagtctttgggcttggtgcgtgaataggtaggtggcccttgaattcgacaa 15857102  T
Q  99 g 99  Q
    |    
T  15857101 g 15857101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8559760 - 8559835
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag 74  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  8559760 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaatag 8559835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 10989120 - 10989230
Alignment:
Q  5 gatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaaga 100  Q
    ||||||||||||||||||||  || |||||||| ||||||||||||||||||||| |||| |||||||||||   |||  |||||||||||||||||||     
T  10989120 gatgtgggacttgggttttttccaatacacccccctcacgcccagcactctttgggcttgatgcgtgaataggtttaggcggcccttgaattcgacaagc 10989219  T
Q  101 tctgataccat 111  Q
    |||||||||||    
T  10989220 tctgataccat 10989230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 45122329 - 45122220
Alignment:
Q  5 gatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagat 101  Q
    ||||||||||||||||||||| || ||||||||||||| |||| |||||||||| ||||||| ||||||||   |||  ||| ||||||| ||||||| |    
T  45122329 gatgtgggacttgggtttttcccaatacaccccctcacacccaacactctttgggcttggtgtgtgaataggtttaggcggctcttgaatacgacaagct 45122230  T
Q  102 ctgataccat 111  Q
    ||||||||||    
T  45122229 ctgataccat 45122220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4196032 - 4196158
Alignment:
Q  1 atccgatgtgggacttggg-tttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcga 95  Q
    |||||||||||| |||||| |||||| || |||||||| ||||||||||||| ||||||| ||||||||||||||||   |||  ||  |||||||||||    
T  4196032 atccgatgtgggccttggggtttttcccaatacacccccctcacgcccagcattctttgggcttggtgcgtgaataggtttaggcggttcttgaattcga 4196131  T
Q  96 caagatctgataccatataggaaaata 122  Q
    |||| ||||||||||||| ||| ||||    
T  4196132 caagctctgataccatattggagaata 4196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 41456419 - 41456499
Alignment:
Q  33 ccccctcacgcccagcactctttggactt-ggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||| ||||||||| |||||||||| ||| ||||||||||| | ||| ||||||||||||||||||   ||||||||||||    
T  41456419 ccccgtcacgcccaacactctttgggctttggtgcgtgaatcggtaggtggcccttgaattcgacagactctgataccata 41456499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 8056410 - 8056477
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||| ||||||||  |||||| |||||| ||||| |||||||||||||||||| | ||||||||||||    
T  8056410 cagcgctctttgggtttggtgagtgaatcgataggtggcccttgaattcgacaggctctgataccata 8056477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 25186704 - 25186637
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    ||||||||||||| ||||||||||||||   ||| || ||||||||||||||| | ||||||||||||    
T  25186704 cagcactctttgggcttggtgcgtgaatcagtaggtgacccttgaattcgacaggctctgataccata 25186637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 36040068 - 36040115
Alignment:
Q  188 ctaattatgcctagtcaatgtaaatattcttttgatgtccatctcatt 235  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||    
T  36040068 ctaattatgcctagtcaatgtaaatattcttttgacttctatctcatt 36040115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 26800448 - 26800512
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||||  |||||||||||||| | ||| |||||||||||||||||| | ||| ||||||||    
T  26800448 cactctttgagcttggtgcgtgaatcggtaggtggcccttgaattcgacaggctctaataccata 26800512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 3895311 - 3895244
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    ||||||||||||| |||||||||||||| | | | ||||||||||| | |||| | ||||||||||||    
T  3895311 cagcactctttgggcttggtgcgtgaatcggttggtggcccttgaaatagacaggctctgataccata 3895244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 15967988 - 15968055
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||| |||| ||||||| |||||| | ||| ||||||||||| |||||| | ||||||||||||    
T  15967988 cagcactcgttgggcttggtgtgtgaatcggtaggtggcccttgaaatcgacaggctctgataccata 15968055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 15968355 - 15968418
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||| ||||||||||| || | ||| ||||||||||| |||||| | |||||||||||    
T  15968355 cactctttgggcttggtgcgtgtattggtaggtggcccttgaaatcgacaggctctgataccat 15968418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 22188866 - 22188799
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    ||||||||||||| |||||||||||||| | |||||  |||||||| ||||||   ||||||||||||    
T  22188866 cagcactctttgggcttggtgcgtgaatcggtagattacccttgaaatcgacagactctgataccata 22188799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25186794 - 25186737
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttgg 57  Q
    |||||||||||||||| |||||||  || ||||| || ||||||||||||||||||||    
T  25186794 atccgatgtgggacttaggttttttccaatacactccgtcacgcccagcactctttgg 25186737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 39124946 - 39124878
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtg 69  Q
    |||| ||||||||| |||||||||| || |||||||||||| ||||||||||  ||| ||||||||||||    
T  39124946 atccaatgtgggacctgggtttttcccaatacaccccctcatgcccagcact-attgcacttggtgcgtg 39124878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 37537180 - 37537232
Alignment:
Q  4 cgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactcttt 55  Q
    |||||||||||||| ||||||| || | |||||||||||||| ||||||||||    
T  37537180 cgatgtgggacttgagtttttcccaattcaccccctcacgcctagcactcttt 37537232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11317070 - 11316958
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||    
T  11317070 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtaggtggcccttgaattcgacaa 11316971  T
Q  99 gatctgataccat 111  Q
    | |||||||||||    
T  11316970 gctctgataccat 11316958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 11313464 - 11313579
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  11313464 atccgatgtgggatttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 11313563  T
Q  97 aagatctgataccata 112  Q
    ||| ||||||||||||    
T  11313564 aagctctgataccata 11313579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 29742516 - 29742628
Alignment:
Q  1 atccgatgtgggacttgggtttttc-tcatacacccc-ctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    ||||||||||||||||  ||||||| | ||||||||| |||||||||| |||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  29742516 atccgatgtgggacttaagtttttcctaatacacccccctcacgcccaacactctttgggcttggtgcgtgaataggtaagtggcccttgaattcgacaa 29742615  T
Q  99 gatctgataccat 111  Q
    | |||||||||||    
T  29742616 gctctgataccat 29742628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 30527064 - 30526953
Alignment:
Q  1 atccgatgtgggacttgggtt-tttctcatacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||||||||||||||| ||| ||||  ||||||||||||||| ||| |||||||||| |||||||||||||||| ||| || ||||||||||||||||     
T  30527064 atccgatgtgggacttgagttgtttccaatacaccccctcacgtccaacactctttgggcttggtgcgtgaatagttaggtgtcccttgaattcgacaaa 30526965  T
Q  100 atctgataccat 111  Q
     |||||||||||    
T  30526964 ctctgataccat 30526953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 25999045 - 25998932
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactc--tttggacttggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| |||||  ||| ||||||||||||| |||| ||| || || |||||||| |||    
T  25999045 atccgatgtgggacttgggtttttcccaatacaccccctcacgcccatcactccttttagacttggtgcgtggataggtaggtgccctttgaattcaaca 25998946  T
Q  98 agatctgataccat 111  Q
    || |||||||||||    
T  25998945 agctctgataccat 25998932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 24558782 - 24558698
Alignment:
Q  28 atacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||| |||||||||||||||||||| |||||||||||||| | ||| |||||| ||||||||||||| |||||||||||    
T  24558782 atacacccccgtcacgcccagcactctttgggcttggtgcgtgaatcggtaggtggcccatgaattcgacaagctctgataccat 24558698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 26098567 - 26098457
Alignment:
Q  4 cgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttg--gacttggtgcgtgaatagatagatggcccttgaattcgacaaga 100  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||||   ||||||||||||| |||| ||| || || ||||| ||||||||     
T  26098567 cgatgtgggacttgggtttttcccaatacaccccctcacgcccatcactctttttagacttggtgcgtggataggtaggtgccctttgaactcgacaagc 26098468  T
Q  101 tctgataccat 111  Q
    |||||||||||    
T  26098467 tctgataccat 26098457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26098776 - 26098663
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttg--gacttggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    ||||||||| ||||||||||||||| || ||||||||||||| |||| ||||||||   ||||||||||||| |||| ||| || || ||||||||||||    
T  26098776 atccgatgtaggacttgggtttttcccaatacaccccctcacacccatcactctttttagacttggtgcgtggataggtaggtgccctttgaattcgaca 26098677  T
Q  98 agatctgataccat 111  Q
    || |||||||||||    
T  26098676 agttctgataccat 26098663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 19712486 - 19712598
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    ||||||||||| || ||| |||||| || ||||||||  ||||||||| |||||||||| | |||||||||||| | ||| |||||||||||||||||||    
T  19712486 atccgatgtggaacatggatttttcccaatacacccctgtcacgcccaacactctttgggcatggtgcgtgaatcggtaggtggcccttgaattcgacaa 19712585  T
Q  99 gatctgataccat 111  Q
    | |||||||||||    
T  19712586 gttctgataccat 19712598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 18494360 - 18494470
Alignment:
Q  5 gatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaaga 100  Q
    ||||||||| ||||||||||| || |||||||| ||||||||||||||||||| | ||||||||||||||||   |||   ||||||||||||||||||     
T  18494360 gatgtgggatttgggtttttcccaatacacccccctcacgcccagcactctttaggcttggtgcgtgaataggtttaggcagcccttgaattcgacaagc 18494459  T
Q  101 tctgataccat 111  Q
    |||||||||||    
T  18494460 tctgataccat 18494470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 16590206 - 16590090
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactcttt--ggacttggtgcgtgaatagat--agatggcccttgaattcg 94  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||| ||||||||  || |||||||| ||||||| |  ||  ||||||||||||||    
T  16590206 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccaacactctttttgggcttggtgcatgaataggtttaggcggcccttgaattcg 16590107  T
Q  95 acaagatctgataccat 111  Q
    ||||| |||||||||||    
T  16590106 acaagttctgataccat 16590090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 16605174 - 16605290
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactcttt--ggacttggtgcgtgaatagat--agatggcccttgaattcg 94  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||| ||||||||  || |||||||| ||||||| |  ||  ||||||||||||||    
T  16605174 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccaacactctttttgggcttggtgcatgaataggtttaggcggcccttgaattcg 16605273  T
Q  95 acaagatctgataccat 111  Q
    ||||| |||||||||||    
T  16605274 acaagttctgataccat 16605290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 12124780 - 12124882
Alignment:
Q  5 gatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatct 103  Q
    |||||||||||| |||||||| || |||| ||  ||||||||| |||||||||| |||| ||||||||||| ||| |||||||||||||||||| | |||    
T  12124780 gatgtgggacttaggtttttcccaatacatcctttcacgcccaacactctttgggcttg-tgcgtgaataggtaggtggcccttgaattcgacatgctct 12124878  T
Q  104 gata 107  Q
    ||||    
T  12124879 gata 12124882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 8930034 - 8929960
Alignment:
Q  37 ctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||| ||||| ||||||||||| ||||||||| ||||| ||| |||| ||||||||||||||| |||||||||||    
T  8930034 ctcatgcccatcactctttggatttggtgcgttaataggtaggtggctcttgaattcgacaagctctgataccat 8929960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 15102843 - 15102931
Alignment:
Q  11 ggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    ||||||||||||||| || ||||||||  ||||||||| ||||||||||  ||||||||||||| | ||| ||||||||||||||||||    
T  15102843 ggacttgggtttttcccaatacacccctgtcacgcccaacactctttgggtttggtgcgtgaatcggtaggtggcccttgaattcgaca 15102931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 3713193 - 3713112
Alignment:
Q  28 atacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgatacc 109  Q
    ||||| || |||||||||| |||||||||| ||||||| | |||| | ||| ||| |||||||||||||||| |||||||||    
T  3713193 atacatcctctcacgcccatcactctttgggcttggtgtgagaatcggtaggtggtccttgaattcgacaagctctgatacc 3713112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 30539418 - 30539362
Alignment:
Q  43 cccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||| ||||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  30539418 cccagaactctttgggcttggtgcgtggataggtaggtggcccttgaattcgacaag 30539362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15101193 - 15101268
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag 74  Q
    |||||||||||||||||| |||||| || |||||||| |||||||||| |||||||||| | |||| |||||||||    
T  15101193 atccgatgtgggacttggatttttcccaatacacccccctcacgcccaacactctttgggcctggtacgtgaatag 15101268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 2904989 - 2904909
Alignment:
Q  33 ccccctcacgcccagcactcttt--ggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||||||| ||||||||  || ||||||||||| || | || ||| ||||||||||||||||| ||| |||||||    
T  2904989 ccccctcacgcccaacactctttttgggcttggtgcgtggattggtaaatgacccttgaattcgacaagttctaataccat 2904909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 2923119 - 2923172
Alignment:
Q  38 tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaat 91  Q
    |||||| ||||||||||||| |||||||||||||| | ||| ||||||||||||    
T  2923119 tcacgcacagcactctttgggcttggtgcgtgaatcggtaggtggcccttgaat 2923172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 16876936 - 16876999
Alignment:
Q  50 ctctttggacttggtgcgtgaatagat--agatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||| |||||||||||||||| |  ||  ||||||||||||||||||| |||||||||||    
T  16876936 ctctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctgataccat 16876999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 2923038 - 2923112
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggac-ttggtgcgtgaat 72  Q
    |||||| ||||||| || ||||||| || ||||||||| |||||||||||||||||||| | |||||||||||||    
T  2923038 atccgacgtgggacatgagtttttcccaatacacccccgtcacgcccagcactctttgggctttggtgcgtgaat 2923112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13692250 - 13692362
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactc--tttggacttggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    |||||||||| |||||| ||||||| || |||||||| |||| || | |||||  ||||| ||| ||||||| |||||||  || |||||||||||||||    
T  13692250 atccgatgtgagacttgagtttttcccaatacaccccgtcactccaa-cactcattttgggcttagtgcgtggatagataagtgacccttgaattcgaca 13692348  T
Q  98 agatctgataccat 111  Q
    || ||| |||||||    
T  13692349 agctctaataccat 13692362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3015499 - 3015610
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    |||||||||||| |||||||||||| || |||||||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  3015499 atccgatgtggggcttgggtttttcccaatacaccccctcacgcccatcactctttgggcttggtgcgtgaataggtaggtggcccttgaattcgacaag 3015598  T
Q  100 atctgataccat 111  Q
     |||||||||||    
T  3015599 ctctgataccat 3015610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 39268248 - 39268137
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||  |||||||||| || | ||| |||||||||||||| |||||    
T  39268248 atccgatgtgggacttgggtttttcccaatacaccccctcacgcccagcactctttgggattggtgcgtggattggtaggtggcccttgaattcaacaag 39268149  T
Q  100 atctgataccat 111  Q
     |||||||||||    
T  39268148 ctctgataccat 39268137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11632453 - 11632340
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaataga--tagatggcccttgaattcgaca 97  Q
    |||||||||||||||||| |||||  || |||||||||||||||||| ||||||||||||||||||||||||||||  |||  |||||||||||||||||    
T  11632453 atccgatgtgggacttggattttttccaatacaccccctcacgcccaacactctttggacttggtgcgtgaatagatttaggcggcccttgaattcgaca 11632354  T
Q  98 agatctgataccat 111  Q
    || |||||||||||    
T  11632353 agctctgataccat 11632340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 48186 - 48300
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  48186 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 48285  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  48286 aagctctgataccat 48300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 36307832 - 36307912
Alignment:
Q  31 caccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||| |||||||||||    
T  36307832 caccccctcacgcccagcactctttgggcttggtgtgttaataggtagatggcccttgaattcgacaagctctgataccat 36307912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 34457325 - 34457211
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  34457325 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccatcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 34457226  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  34457225 aagctctgataccat 34457211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 43490338 - 43490452
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||| ||    
T  43490338 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcaac 43490437  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  43490438 aagctctgataccat 43490452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 28156261 - 28156149
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatag-----atagatggcccttgaattcg 94  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||      |||  ||||||||||||||    
T  28156261 atccgatgtgggacttgggtttttcccaatacaccccctcatgcccagcactctttgggcttggtgcgtgaataggtggtttaggcggcccttgaattcg 28156162  T
Q  95 acaagatctgata 107  Q
    ||||| |||||||    
T  28156161 acaagttctgata 28156149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 2908644 - 2908758
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||  ||||||| ||||||||   ||| || ||||||||||||||    
T  2908644 atccgatgtgggacttgggtttttcccaatacacccctctcacgcccagcactctttgagcttggtgtgtgaataggtttaggtgacccttgaattcgac 2908743  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  2908744 aagctctgataccat 2908758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 18107560 - 18107671
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||||||||||||||||||||||| || |||||||| ||||||  | |||||||||| ||||||||||| |||| ||| ||| ||||||||||||||||    
T  18107560 atccgatgtgggacttgggtttttcccaatacaccccgtcacgctaaacactctttgggcttggtgcgtggataggtaggtggtccttgaattcgacaag 18107659  T
Q  100 atctgataccat 111  Q
     | |||||||||    
T  18107660 ctttgataccat 18107671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 18914243 - 18914357
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaata--gatagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||||| |||||||||||||||    |||  ||||||||||||||||    
T  18914243 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactttttgggcttggtgcgtgaataagtttaggcggcccttgaattcgac 18914342  T
Q  97 aagatctgataccat 111  Q
    ||| || ||||||||    
T  18914343 aagctccgataccat 18914357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13413812 - 13413737
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-taca-ccccctcacgcccagcactctttggacttggtgcgtgaatag 74  Q
    ||||||||||||||||||||||||| || |||| |||||| |||||||||||||||||| ||||||||||||||||    
T  13413812 atccgatgtgggacttgggtttttcccaatacatcccccttacgcccagcactctttgggcttggtgcgtgaatag 13413737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 15510586 - 15510696
Alignment:
Q  1 atccgatgtgggacttgggtttttc-tcatacacc-ccctcacgcccagcactctttgga-cttggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    ||||||||||||||| || ||| || | ||||||| |||||||||||||||||||||||  |||||||||||||||| |||  | |||||||||||||||    
T  15510586 atccgatgtgggactcggatttctcctaatacacctccctcacgcccagcactctttggggcttggtgcgtgaataggtaggcgacccttgaattcgaca 15510685  T
Q  98 agatctgatac 108  Q
    || ||||||||    
T  15510686 agctctgatac 15510696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 40168951 - 40169030
Alignment:
Q  34 cccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||||||||||| ||||| ||||||||||||||||   |||  ||||||||||||||||||| |||||||||||    
T  40168951 cccctcacgcccagcactatttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctgataccat 40169030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 4296760 - 4296850
Alignment:
Q  12 gacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaag 99  Q
    |||||||||||||  || ||||||||||||| ||||||||||||| | ||||||||||||||||   |||| |||||||||||||||||||    
T  4296760 gacttgggttttttccaatacaccccctcacacccagcactctttaggcttggtgcgtgaataggtttagacggcccttgaattcgacaag 4296850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3763122 - 3763050
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaat 72  Q
    |||||||||||||| |||||||||| || |||||| | ||||||||| |||||||||| ||||||||||||||    
T  3763122 atccgatgtgggacatgggtttttcccaatacacctcgtcacgcccatcactctttgggcttggtgcgtgaat 3763050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 18107852 - 18107745
Alignment:
Q  4 cgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactcttt--ggacttggtgcgtgaatagatagatggcccttgaattcgacaaga 100  Q
    |||||||||| ||||||||||| || ||||||| |||||||||| | || |||  || ||||||||||| |||| ||| ||| ||||||||||||||||     
T  18107852 cgatgtgggaattgggtttttcccaatacaccctctcacgcccatctctatttttgggcttggtgcgtggataggtaggtggtccttgaattcgacaagc 18107753  T
Q  101 tctgatac 108  Q
    ||||||||    
T  18107752 tctgatac 18107745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 42398137 - 42398223
Alignment:
Q  110 atataggaaaatattttgatgtcttttattgatcatcaacatataatatatacgaattactgttgcataatcagaaaactaattatgcc 198  Q
    |||||||||||||||| ||| |||||||||||||||||||| || ||||| | |||||||  |||||||||  ||||||||||||||||    
T  42398137 atataggaaaatatttcgatatcttttattgatcatcaaca-at-atatacaggaattacaattgcataatgggaaaactaattatgcc 42398223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15287075 - 15287003
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaata 73  Q
    ||||||| | ||||||||||||||| || |||||||| ||||||| |||||||||||| |||||||||||||||    
T  15287075 atccgatataggacttgggtttttcccaatacacccc-tcacgccaagcactctttgggcttggtgcgtgaata 15287003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 20720459 - 20720539
Alignment:
Q  33 ccccctcacgcccagcactctttggacttggtgcgtgaata--gatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||| ||||||||||||| |||||||||||||||    |||  ||||||||||||||| ||| |||||||||||    
T  20720459 ccccctcacgctcagcactctttgggcttggtgcgtgaataagtttaggcggcccttgaattcgataagctctgataccat 20720539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 36878498 - 36878441
Alignment:
Q  54 ttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||| |||||||||||||||| ||  |||||||||||||||||||| |||||||||||    
T  36878498 ttgggcttggtgcgtgaataggtacgtggcccttgaattcgacaagctctgataccat 36878441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 35527094 - 35527167
Alignment:
Q  42 gcccagcactcttt--ggacttggtgcgtgaatagat--agatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||||  ||||||||||||||||||| |  ||  ||||||||||||||||||| |||||||||||    
T  35527094 gcccagcactctttttggacttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctgataccat 35527167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 8081046 - 8081112
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||| ||||||| |||||| | ||| ||||||||||| |||||| | |||||||||||    
T  8081046 cagcactctttgggcttggtgtgtgaatcggtaggtggcccttgaaatcgacaggctctgataccat 8081112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 37781985 - 37782049
Alignment:
Q  49 actctttggacttggtgcgtgaatagat--agatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||| |||||||||||||||| |  ||  ||||||||||||||||||| |||||||||||    
T  37781985 actctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctgataccat 37782049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 38376925 - 38376846
Alignment:
Q  34 cccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||| |||||||||| ||| |||| |||||||   |||  ||||||||| ||||||||| |||||||||||    
T  38376925 cccctcacgcccaacactctttgggcttagtgcatgaataggtttaggcggcccttgacttcgacaagctctgataccat 38376846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32501233 - 32501181
Alignment:
Q  1 atccgatgtgggacttgggtttttctcatacaccccctcacgcccagcactctt 54  Q
    |||||||||||||||||| |||||| || |||||||||||| |||| |||||||    
T  32501233 atccgatgtgggacttggatttttccca-acaccccctcacacccaacactctt 32501181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37656814 - 37656874
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggact 60  Q
    |||||||||| |||||| ||||||  || |||||||||||||||||| |||| ||||||||    
T  37656814 atccgatgtgagacttgagttttttccaatacaccccctcacgcccaacactgtttggact 37656874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 43361634 - 43361746
Alignment:
Q  1 atccgatgtgggacttgggtttttctcatacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaa 98  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||   |||  ||||||||||||||||||    
T  43361634 atccgatgtgggacttgggttttcccaatacaccccctcacgcccagcactctttggacttggtgcgtgaataggtttaggcggcccttgaattcgacaa 43361733  T
Q  99 gatctgataccat 111  Q
    | |||||||||||    
T  43361734 gctctgataccat 43361746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 15392047 - 15391934
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgaca 97  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||   |||  |||||||||||||||||    
T  15392047 atccgatgtgggacttgggtttttcccaatacaccccctcacgcccaacactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgaca 15391948  T
Q  98 agatctgataccat 111  Q
    || |||||||||||    
T  15391947 agctctgataccat 15391934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 16088404 - 16088303
Alignment:
Q  103 tgataccatataggaaaatattttgatgtcttttattgatcatcaacatataatatatac--gaattactgttgcataatcagaaaactaattatgccta 200  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||||  |||||||||  ||||||||||||||||||    
T  16088404 tgataccatataggaaaatatttcgatatcttttattgatcatcaacatgtaatatatacaggaattacaattgcataatgggaaaactaattatgccta 16088305  T
Q  201 gt 202  Q
    ||    
T  16088304 gt 16088303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 38871035 - 38871144
Alignment:
Q  5 gatgtgggacttggg-tttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagat 101  Q
    ||||||||||||||| |||||| || ||||||||| ||||| |||||||||||||| ||||||||||| |||| ||| |||||||||||||||||||| |    
T  38871035 gatgtgggacttggggtttttcccaatacacccccctcacgtccagcactctttgggcttggtgcgtggataggtaggtggcccttgaattcgacaagct 38871134  T
Q  102 ctgataccat 111  Q
    ||||||||||    
T  38871135 ctgataccat 38871144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 5325008 - 5325122
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    |||||||||||||||||  |||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||   |||| |||||||||||||||     
T  5325008 atccgatgtgggacttgaatttttcccaatacacccccctcacgcccagcactctttggccttggtgcgtgaataggtttagacggcccttgaattcgat 5325107  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  5325108 aagctctgataccat 5325122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 2997138 - 2997250
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    |||||||||||||||| |||||||| || |||||| || |||||||||||||||||||| |||||||||||||| | ||| ||||| |||||||||| ||    
T  2997138 atccgatgtgggacttaggtttttcccaatacacctccgtcacgcccagcactctttgggcttggtgcgtgaatcggtaggtggcctttgaattcgagaa 2997237  T
Q  99 gatctgataccat 111  Q
    | ||| |||||||    
T  2997238 gctctaataccat 2997250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 11590613 - 11590534
Alignment:
Q  33 ccccctcacgcccagcactctttgga-cttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||||||||||||| |||||||||||    
T  11590613 ccccctcacgcccagcactctttggggcttggtgcgtgaataggtaggcggcccttgaattcgacaagctctgataccat 11590534  T

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Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 12314600 - 12314486
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    |||||||||||||||||| |||||| || ||||||||| ||||||||| |||||||||| ||| ||||||||||||   |||  ||||||||||||||||    
T  12314600 atccgatgtgggacttggatttttcccaatacacccccctcacgcccaacactctttgggcttagtgcgtgaataggtttaggcggcccttgaattcgac 12314501  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  12314500 aagctctgataccat 12314486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 29272975 - 29273055
Alignment:
Q  33 ccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||||| |||||||||||    
T  29272975 ccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctgataccat 29273055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 29273134 - 29273214
Alignment:
Q  33 ccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||||| |||||||||||    
T  29273134 ccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctgataccat 29273214  T

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Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 29413360 - 29413256
Alignment:
Q  11 ggacttgggtttttctca-tacaccccc-tcacgcccagcactcttt--ggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgat 106  Q
    ||||||||||||||| || ||||||||| ||||| ||||||||||||  || ||||||||||| |||| ||| |||||||||||||||||||| ||||||    
T  29413360 ggacttgggtttttcccaatacacccccctcacgtccagcactctttttgggcttggtgcgtggataggtaggtggcccttgaattcgacaagctctgat 29413261  T
Q  107 accat 111  Q
    |||||    
T  29413260 accat 29413256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 39648962 - 39649069
Alignment:
Q  4 cgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaag 99  Q
    |||||||||||||||||||||| || |||||||| |||||||||| |||||||||| ||||||||||||||||   |||  |||||||||||| ||||||    
T  39648962 cgatgtgggacttgggtttttcccaatacacccccctcacgcccatcactctttgggcttggtgcgtgaataggtttaggcggcccttgaatttgacaag 39649061  T
Q  100 atctgata 107  Q
     |||||||    
T  39649062 ctctgata 39649069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24382650 - 24382765
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggccctt--gaattcga 95  Q
    |||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| |||||| | ||||| |   ||| ||||||||  ||||||||    
T  24382650 atccgatgtgggacttggttttttctcaatacatcccctcacgcccagcactctttgggcttggttcatgaattggtttaggtggcccttgagaattcga 24382749  T
Q  96 caagatctgataccat 111  Q
    |||  |||||||||||    
T  24382750 caaactctgataccat 24382765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 7171717 - 7171643
Alignment:
Q  38 tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    ||||||||| ||||||||||  ||||||||||||| | ||| |||||||||||||||||| | ||||||||||||    
T  7171717 tcacgcccaacactctttgggtttggtgcgtgaatcggtaggtggcccttgaattcgacaggctctgataccata 7171643  T

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Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 9381089 - 9381015
Alignment:
Q  37 ctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||| ||||| |||| ||||||| |||||||| ||| ||||||||||||| |||||| |||||||||||    
T  9381089 ctcacgcccaacactcattgggcttggtgtgtgaatagttaggtggcccttgaatttgacaagctctgataccat 9381015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 22892774 - 22892886
Alignment:
Q  5 gatgtgggacttgggtttttctc-atacacc-ccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaaga 100  Q
    ||||||||||||||||||||| | ||||||| || ||||||||| |||||||||| |||||||| |||||||   |||   ||||||||||||||||||     
T  22892774 gatgtgggacttgggtttttcccaatacacctccgtcacgcccaacactctttgggcttggtgcatgaataggtttaggcagcccttgaattcgacaagc 22892873  T
Q  101 tctgataccatat 113  Q
    | |||||||||||    
T  22892874 tttgataccatat 22892886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 6238261 - 6238328
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    ||||||||||||| ||| |||||||||| | ||| |||||||||||||||||| | ||||||||||||    
T  6238261 cagcactctttgggctttgtgcgtgaatcggtaggtggcccttgaattcgacaggctctgataccata 6238328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 47086191 - 47086258
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    ||||||||||| | |||||||||||||| | ||| |||||||||||||||||| | ||||||||||||    
T  47086191 cagcactcttttggcttggtgcgtgaatcggtaggtggcccttgaattcgacaggctctgataccata 47086258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 6238043 - 6238128
Alignment:
Q  1 atccgatgtgggacttgggtttttctcatacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggccctt 87  Q
    |||||||||||||| || ||||| |  ||||||||| ||||||||| |||||||||| |||||||||||||| | ||| ||||||||    
T  6238043 atccgatgtgggacatgagttttcccaatacaccccgtcacgccca-cactctttgggcttggtgcgtgaatcggtaggtggccctt 6238128  T

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Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 20429163 - 20429217
Alignment:
Q  54 ttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgatac 108  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  20429163 ttgggcttggtgcgtggatagataggtggcccttgaattcgacaagctctgatac 20429217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 9381292 - 9381214
Alignment:
Q  33 ccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||| ||  ||||| |||| ||||||| |||||||| ||| ||||| ||||||| |||||| |||||||||||    
T  9381292 ccccctcacggcctacactcattgggcttggtgtgtgaatagttaggtggccattgaatttgacaagctctgataccat 9381214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 22826920 - 22826986
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccatata 114  Q
    |||||||||| |||||||||||||| | ||| ||||||||||| |||| | | ||||||||||||||    
T  22826920 cactctttgggcttggtgcgtgaatcggtaggtggcccttgaaatcgataggctctgataccatata 22826986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 46098677 - 46098592
Alignment:
Q  28 atacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||||||| |  ||||||||| ||||||||||||||||   |||  ||||||| ||||||||||| | |||||||||    
T  46098677 atacaccccctcacgcctaatactctttgggcttggtgcgtgaataggtttaggcggcccttaaattcgacaagctttgataccat 46098592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 49895340 - 49895275
Alignment:
Q  34 cccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||||||||||| ||||| |||| ||||||| |||||||| ||| ||  ||||||||||||||||    
T  49895340 cccctcacgcccatcactcattgggcttggtgtgtgaataggtaggtgatccttgaattcgacaag 49895275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 22892507 - 22892578
Alignment:
Q  5 gatgtgggacttgggtttttctc-atacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag 74  Q
    ||||||||||||||||||||| | |||||||||  || |||||| |||||||||| ||||||||| ||||||    
T  22892507 gatgtgggacttgggtttttcccaatacaccccagtctcgcccaacactctttgggcttggtgcgcgaatag 22892578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 40073429 - 40073370
Alignment:
Q  53 tttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    ||||| |||||| ||||||| | ||| |||| ||||||||||||||| ||||||||||||    
T  40073429 tttgggcttggttcgtgaatcggtaggtggctcttgaattcgacaagctctgataccata 40073370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 19863162 - 19863096
Alignment:
Q  33 ccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||||||||||||| | ||||||| |||||||||||||| | ||| || || |||||||| |||||    
T  19863162 ccccctcacgcccagtattctttgggcttggtgcgtgaatcggtaggtgaccattgaattctacaag 19863096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24382233 - 24382349
Alignment:
Q  1 atccgatgtgggacttgggtttttctc-atacac-cccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggccctt--gaattcg 94  Q
    ||||||||||||||||||| ||||| | |||||| ||| ||||||  |||||||||||| ||||||| | ||||||   ||| ||||||||  ||||| |    
T  24382233 atccgatgtgggacttgggattttcccaatacactcccgtcacgcttagcactctttgggcttggtgagcgaatagttttaggtggcccttgagaatttg 24382332  T
Q  95 acaagatctgataccat 111  Q
    ||||| |||||||||||    
T  24382333 acaagctctgataccat 24382349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40073330 - 40073256
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggac-ttggtgcgtgaat 72  Q
    |||||||||||||| ||| |||||| || ||||||||| ||||| |||||||||||||| | |||||||||||||    
T  40073330 atccgatgtgggacatggatttttcccaatacacccccgtcacgtccagcactctttgggctttggtgcgtgaat 40073256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24382442 - 24382557
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttga--attcga 95  Q
    ||||||||| ||| ||||||||||| || |||||||||||||| ||| ||||| |||| |||||| | ||||| |   ||| ||||||||||   |||||    
T  24382442 atccgatgttggatttgggtttttcccaatacaccccctcacgtccaacactcattgggcttggttcatgaattggtttaggtggcccttgagctttcga 24382541  T
Q  96 caagatctgataccat 111  Q
    |||| |||||||||||    
T  24382542 caagctctgataccat 24382557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 28246015 - 28245903
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||    
T  28246015 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggtttggtgcgtgaataggtaggtggcccttgaattcgacaa 28245916  T
Q  99 gatctgataccat 111  Q
    | |||||||||||    
T  28245915 gctctgataccat 28245903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 17077022 - 17077133
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||| |||||||| | |||||||||||||||| ||| ||||||||||||||||||||    
T  17077022 atccgatgtgggacttgggtttttcccaatacaccacctcacgcccatcactctttaggcttggtgcgtgaataggtaggtggcccttgaattcgacaag 17077121  T
Q  100 atctgataccat 111  Q
     |||||||||||    
T  17077122 ctctgataccat 17077133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33629885 - 33629774
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||| ||||||||    
T  33629885 atccgatgtgggacttgggtttttcccaatacacccactcacgcccagcactctttgggcttggtgcgtgaataggtaggtggtccttgaagtcgacaag 33629786  T
Q  100 atctgataccat 111  Q
     |||||||||||    
T  33629785 ctctgataccat 33629774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 29113467 - 29113359
Alignment:
Q  5 gatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatc 102  Q
    |||||||||| |||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||   ||| |||||||||||||||||||| ||    
T  29113467 gatgtgggacatgggtttttcccaatacacccccgtcacgcccagcactctttgggcttggtgcgtgaatcagtaggtggcccttgaattcgacaagttc 29113368  T
Q  103 tgataccat 111  Q
    |||||||||    
T  29113367 tgataccat 29113359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 1678237 - 1678124
Alignment:
Q  111 tataggaaaatattttgatgtcttttattgatcatcaacatataatatatac--gaattactgttgcataatcagaaaactaattatgcctagtcaatgt 208  Q
    ||||||||||||||| ||| ||||||| ||||||||||||| |||||||||   |||||||  ||||||||   |||||||||||||||||| |||||||    
T  1678237 tataggaaaatatttcgatatcttttactgatcatcaacatgtaatatatataggaattacaattgcataaagggaaaactaattatgcctaatcaatgt 1678138  T
Q  209 aaatattcttttga 222  Q
    ||||||||||||||    
T  1678137 aaatattcttttga 1678124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 7806476 - 7806585
Alignment:
Q  1 atccgatgtgggacttgggtttttctcatacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaaga 100  Q
    |||||||||| ||| |||||||  || || ||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||| |||     
T  7806476 atccgatgtgagacctgggtttc-ctaatgcaccccctcacgcccagcactctttgggcttggtgcgtgaataggtaggtgtcccttgaattcgaaaagc 7806574  T
Q  101 tctgataccat 111  Q
    |||||||||||    
T  7806575 tctgataccat 7806585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 21498553 - 21498437
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||| | ||||||||||||||||   |||  ||||||||||||||||    
T  21498553 atccgatgtgggacttgggtttttcccaatacacccccctcatgcccagcactctttaggcttggtgcgtgaataggtttaggcggcccttgaattcgac 21498454  T
Q  97 aagatctgataccatat 113  Q
    ||| |||||||||||||    
T  21498453 aagctctgataccatat 21498437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 400456 - 400563
Alignment:
Q  4 cgatgtgggacttgggtttttc-tcatacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatc 102  Q
    ||||||||||||| |||||||| | ||||||||||||||||||| || ||||||| ||||||||||||| |  ||| || ||||||||||||||||| ||    
T  400456 cgatgtgggacttaggtttttccttatacaccccctcacgcccaacattctttgggcttggtgcgtgaagaagtaggtgacccttgaattcgacaagctc 400555  T
Q  103 tgatacca 110  Q
    ||||||||    
T  400556 tgatacca 400563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 1664251 - 1664150
Alignment:
Q  103 tgataccatataggaaaatattttgatgtcttttattgatcatcaacatataatatatac--gaattactgttgcataatcagaaaactaattatgccta 200  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||||  ||||||||   | ||||||||||||||||    
T  1664251 tgataccatataggaaaatatttcgatatcttttattgatcatcaacatgtaatatatacaggaattacaattgcataaagggtaaactaattatgccta 1664152  T
Q  201 gt 202  Q
    ||    
T  1664151 gt 1664150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 27634408 - 27634520
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgaca 97  Q
    |||||||||||||||| |||||||| || |||||||| ||||||||| |||||||||| ||||||||||||||||   |||  |||||||||||||||||    
T  27634408 atccgatgtgggactttggtttttcccaatacacccc-tcacgcccaacactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgaca 27634506  T
Q  98 agatctgataccat 111  Q
    || |||||||||||    
T  27634507 agctctgataccat 27634520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 56511521 - 56511412
Alignment:
Q  6 atgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctt--tggacttggtgcgtgaatagatagatggcccttgaattcgacaagat 101  Q
    |||||||||||||||||||| || ||||||||| ||||||||||| |||||  ||||||||||||||| |||| ||| | |||||||||||||||||| |    
T  56511521 atgtgggacttgggtttttcccaatacacccccctcacgcccagctctcttcttggacttggtgcgtggataggtaggtagcccttgaattcgacaagct 56511422  T
Q  102 ctgataccat 111  Q
    ||||||||||    
T  56511421 ctgataccat 56511412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 1923077 - 1923185
Alignment:
Q  5 gatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatc 102  Q
    |||||||||| |||||||||| || ||||||||| ||||||||| |||||||||| ||||||||||||||   ||| ||||||||||||| |||||| ||    
T  1923077 gatgtgggacatgggtttttcccaatacacccccgtcacgcccaacactctttgggcttggtgcgtgaatcattaggtggcccttgaattggacaagctc 1923176  T
Q  103 tgataccat 111  Q
    |||||||||    
T  1923177 tgataccat 1923185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 49380786 - 49380870
Alignment:
Q  28 atacaccccctcacgcccagcactctttgga-cttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| |||  ||||||| ||||||||||| |||||||||||    
T  49380786 atacaccccctcacgcccagcactctttggggcttggtgcgtgaataggtaggcggcccttaaattcgacaagctctgataccat 49380870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 35399325 - 35399405
Alignment:
Q  33 ccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||||| |||||||||||    
T  35399325 ccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctgataccat 35399405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 12016765 - 12016880
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc--ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcga 95  Q
    ||||||||||||||||||||||||| || ||||||||  |||||||||| |||||||||| ||||||| ||||||||   |||   | ||||||||||||    
T  12016765 atccgatgtgggacttgggtttttcccaatacaccccccctcacgcccaacactctttgggcttggtgtgtgaataggtttaggcagtccttgaattcga 12016864  T
Q  96 caagatctgataccat 111  Q
    |||| |||||||||||    
T  12016865 caagctctgataccat 12016880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 41743271 - 41743328
Alignment:
Q  38 tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcga 95  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||    
T  41743271 tcacgcccaacactctttggacttggtgcttgaataggtagatcacccttgaattcga 41743328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 3640387 - 3640319
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa-gatctgataccata 112  Q
    ||||||||||||| ||||||||||| || | ||| ||||||||||||||||||| | ||||||||||||    
T  3640387 cagcactctttgggcttggtgcgtggatcggtaggtggcccttgaattcgacaaggctctgataccata 3640319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 14945072 - 14945008
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||||| |||||||||||||| | ||| || ||||||||||||||| | ||||||||||||    
T  14945072 cactctttgggcttggtgcgtgaatcggtaggtgacccttgaattcgacatgctctgataccata 14945008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 45684316 - 45684380
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||||| |||||||||||||| | ||| ||||||||||| |||||| | ||||||||||||    
T  45684316 cactctttgggcttggtgcgtgaatcggtaggtggcccttgaaatcgacacgctctgataccata 45684380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 10390394 - 10390464
Alignment:
Q  40 acgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||| |||||||||  |||||||||||||| | ||| || ||||||||||||||||| |||||||||||    
T  10390394 acgcccaacactctttgagcttggtgcgtgaatgggtaggtg-cccttgaattcgacaagctctgataccat 10390464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 11786860 - 11786969
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactct--ttggacttggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    ||||||||||| |||| |||||||| || ||||  ||||||| |||| ||||||  |||| ||||||||||| |||| |||||| | |||||||||||||    
T  11786860 atccgatgtggaacttaggtttttcccaatacaatccctcacacccaacactctctttgggcttggtgcgtggataggtagatgactcttgaattcgaca 11786959  T
Q  98 agatctgata 107  Q
    |  |||||||    
T  11786960 aactctgata 11786969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 11799027 - 11799136
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactct--ttggacttggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    ||||||||||| |||| |||||||| || ||||  ||||||| |||| ||||||  |||| ||||||||||| |||| |||||| | |||||||||||||    
T  11799027 atccgatgtggaacttaggtttttcccaatacaatccctcacacccaacactctctttgggcttggtgcgtggataggtagatgactcttgaattcgaca 11799126  T
Q  98 agatctgata 107  Q
    |  |||||||    
T  11799127 aactctgata 11799136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 53386192 - 53386272
Alignment:
Q  31 caccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||| ||||||||||| | | ||||| |||||||||||||||   || || ||||||||||| ||||| |||||||||||    
T  53386192 caccctctcacgcccagtaatttttgggcttggtgcgtgaatatgcaggtgacccttgaattcaacaagctctgataccat 53386272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3640478 - 3640404
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggac-ttggtgcgtgaat 72  Q
    |||||||||||||  || ||||||| || ||||||||| |||||||||||||||||||| | |||||||||||||    
T  3640478 atccgatgtgggagatgagtttttcccaatacacccccgtcacgcccagcactctttgggctttggtgcgtgaat 3640404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 8305129 - 8305199
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccatatag 115  Q
    ||||||||||||| |||| ||| ||||| ||||| |||||||| || || ||||| |||||||||| ||||    
T  8305129 cagcactctttgggcttgatgcatgaatcgataggtggcccttaaaatccacaagttctgataccaaatag 8305199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 53559387 - 53559441
Alignment:
Q  1 atccgatgtgggacttgggtttttctc-ataca-ccccctcacgcccagcactct 53  Q
    |||||||||||||||||| |||||| | ||||| |||||||||||||||||||||    
T  53559387 atccgatgtgggacttggttttttcccaatacacccccctcacgcccagcactct 53559441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 40716812 - 40716861
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    |||||||| ||||| |||||||||| | ||| ||||||||||||||||||    
T  40716812 cactctttagactttgtgcgtgaatcggtaggtggcccttgaattcgaca 40716861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 6751587 - 6751699
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    ||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||||    
T  6751587 atccgatttgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtaggtgacccttgaattcgacaa 6751686  T
Q  99 gatctgataccat 111  Q
    | |||||||||||    
T  6751687 gctctgataccat 6751699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4258082 - 4258193
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    |||||||||| |||||||||||||| || |||||||||||||||||| |||||||||| |||||| |||| |||| ||| ||||||||||||||||||||    
T  4258082 atccgatgtgagacttgggtttttcccaatacaccccctcacgcccaacactctttgggcttggtacgtggataggtaggtggcccttgaattcgacaag 4258181  T
Q  100 atctgataccat 111  Q
     |||||||||||    
T  4258182 ctctgataccat 4258193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 16565120 - 16565009
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| |||||| |||| || | ||| |||||||||||||||| |||    
T  16565120 atccgatgtgggacttgggtttttcccaatacaccccctcacgcccaacactctttgggcttggtccgtggattggtaggtggcccttgaattcgataag 16565021  T
Q  100 atctgataccat 111  Q
     |||||||||||    
T  16565020 ctctgataccat 16565009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 16600542 - 16600653
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| |||||| |||| || | ||| |||||||||||||||| |||    
T  16600542 atccgatgtgggacttgggtttttcccaatacaccccctcacgcccaacactctttgggcttggtccgtggattggtaggtggcccttgaattcgataag 16600641  T
Q  100 atctgataccat 111  Q
     |||||||||||    
T  16600642 ctctgataccat 16600653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 6813160 - 6813272
Alignment:
Q  1 atccgatgtgggacttgggtttttctcat-acaccccct-cacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    ||||||||||||||||| ||||||| ||  ||||||||| || |||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||    
T  6813160 atccgatgtgggacttgtgtttttcccaacacacccccttcatgcccagcactctttgggcttggtgcgtgaatatgtaggtggcccttgaattcgacaa 6813259  T
Q  99 gatctgataccat 111  Q
    | |||||||||||    
T  6813260 gctctgataccat 6813272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 6783060 - 6782946
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    |||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  6783060 atccgatgtgagacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 6782961  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  6782960 aagctctgataccat 6782946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 258646 - 258544
Alignment:
Q  11 ggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgatac 108  Q
    ||||||||||||||| || ||||||||| ||||||||| |||||||||| |||||||||||||| | ||| |||||||||||||||||||| ||||||||    
T  258646 ggacttgggtttttcccaatacacccccgtcacgcccaacactctttgggcttggtgcgtgaatcggtaggtggcccttgaattcgacaagctctgatac 258547  T
Q  109 cat 111  Q
    |||    
T  258546 cat 258544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 9379022 - 9378908
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacac-cccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||| ||||||||||||| || ||||| ||||||||| |||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  9379022 atccgatgtggaacttgggtttttcccaatacactcccctcacgtccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 9378923  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  9378922 aagctctgataccat 9378908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 23396830 - 23396724
Alignment:
Q  7 tgtgggacttgggtttttctcatacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctg 104  Q
    |||||||||||| |||| |  ||||||||||||||||||| |||||||||| ||||||||||||||||   |||  ||||||||||||||||||| ||||    
T  23396830 tgtgggacttggattttcccaatacaccccctcacgcccaacactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctg 23396731  T
Q  105 ataccat 111  Q
    |||||||    
T  23396730 ataccat 23396724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 43366426 - 43366316
Alignment:
Q  4 cgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatc 102  Q
    |||||||||| |||| |||||| || ||||| |||||||||||| |||||| |||| ||||||||||||||| ||| || | ||||||||||||||| ||    
T  43366426 cgatgtgggatttggatttttcccaatacactccctcacgcccaacactctctggatttggtgcgtgaatagttaggtgacacttgaattcgacaaggtc 43366327  T
Q  103 tgataccatat 113  Q
    |||||||||||    
T  43366326 tgataccatat 43366316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33855713 - 33855600
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttg--gacttggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||   ||||||||||||| |||| ||| || || ||||||||||||    
T  33855713 atccgatgtgggacttgggtttttcccaatacaccccctcacacccatcactctttttagacttggtgcgtggataggtaggtgccctttgaattcgaca 33855614  T
Q  98 agatctgataccat 111  Q
    |  |||||||||||    
T  33855613 aactctgataccat 33855600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23821553 - 23821653
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacc-ccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    |||| |||||||||||||||||||| || |||||| ||||||||||||||||||||||  |||||||| ||||||| ||| || |||||||||| |||||    
T  23821553 atcctatgtgggacttgggtttttcccaatacacctccctcacgcccagcactctttgagcttggtgcatgaataggtaggtgacccttgaatttgacaa 23821652  T
Q  99 g 99  Q
    |    
T  23821653 g 23821653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 48114019 - 48113908
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    ||||||||||||||||||||| ||| || ||||||||| ||||||||| |||| ||||| ||||| ||||| |||| ||| || ||||||||||||||||    
T  48114019 atccgatgtgggacttgggttattcccaatacacccccctcacgcccaacact-tttgggcttggcgcgtggataggtaggtgtcccttgaattcgacaa 48113921  T
Q  99 gatctgataccat 111  Q
    | |||||||||||    
T  48113920 gctctgataccat 48113908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 23821441 - 23821524
Alignment:
Q  28 atacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||| |  ||||||||||||||||  ||| |||||||    
T  23821441 atacaccccctcacgcccatcactctttgggcttggtgcgtgaataggtaggtaacccttgaattcgacaaactctaataccat 23821524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 8682076 - 8681999
Alignment:
Q  35 ccctcacgcccagcactctttggacttggt-gcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||||| |||||||||  |||||| |||||||||| | |||||||||||||||||||||| |||||||||||    
T  8682076 ccctcacgcccaacactctttgatcttggttgcgtgaataggttgatggcccttgaattcgacaagctctgataccat 8681999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 13310329 - 13310414
Alignment:
Q  28 atacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||||||||||||| ||||||||| |||||||||| || ||   |||  ||||||||||||||||||| |||||||||||    
T  13310329 atacaccccctcacgcccagtactctttgggcttggtgcgtaaacaggtttaggcggcccttgaattcgacaagctctgataccat 13310414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 40703737 - 40703850
Alignment:
Q  4 cgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaag 99  Q
    ||||||||||||||| ||||||||| |||||| || |||| |||| |||||||||| ||||||||||||||||   |||  |||||||||||||||||||    
T  40703737 cgatgtgggacttggttttttctcaatacacctccgtcacacccaacactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaag 40703836  T
Q  100 atctgataccatat 113  Q
       |||||||||||    
T  40703837 cgttgataccatat 40703850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 38948318 - 38948404
Alignment:
Q  28 atacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||||   |||   |||||||||||||||||| ||||||||||||    
T  38948318 atacaccccctcacacccagcactctttgagcttggtgtgtgaataggtttaggcagcccttgaattcgacaagctctgataccata 38948404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 10903359 - 10903475
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcc---cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcga 95  Q
    |||||||||||||| || ||||||| || ||||||||| |||||||   ||||||||||||| |||| ||||||||| | ||| |||||||||||||| |    
T  10903359 atccgatgtgggacatgtgtttttcccaatacacccccgtcacgcctagcagcactctttgggcttgatgcgtgaatcggtaggtggcccttgaattcaa 10903458  T
Q  96 caagatctgataccata 112  Q
    || | | ||||||||||    
T  10903459 caggctttgataccata 10903475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 43566157 - 43566078
Alignment:
Q  32 accccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||| | |||||||||||||||||||||  |||| |||   ||| |||||||||||||| ||| |||||||    
T  43566157 accccctcacgcctaacactctttggacttggtgcgtagataggtaggcagcctttgaattcgacaagctctaataccat 43566078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23390612 - 23390538
Alignment:
Q  1 atccgatgtgggacttgggtttttctc-atacaccccc-tcacgcccagcactctttggac-ttggtgcgtgaat 72  Q
    |||||||||||||| |||||||||| | |||||||||| ||||||||| |||||||||| | |||||||||||||    
T  23390612 atccgatgtgggacatgggtttttcccaatacacccccgtcacgcccaacactctttgggctttggtgcgtgaat 23390538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 31374954 - 31374892
Alignment:
Q  37 ctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaag 99  Q
    |||||| ||| |||||||||| ||||||| ||||| || ||| ||||||||||||||||||||    
T  31374954 ctcacgtccatcactctttgggcttggtgtgtgaacaggtaggtggcccttgaattcgacaag 31374892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30768440 - 30768367
Alignment:
Q  1 atccgatgtgggacttgggttttt-ctcatacaccccctcacgcccagcactctttggac-ttggtgcgtgaat 72  Q
    |||||||||||||| || |||||| || ||||||||| ||||||||| |||||||||| | |||||||||||||    
T  30768440 atccgatgtgggacatgagtttttcctaatacaccccgtcacgcccaacactctttgggctttggtgcgtgaat 30768367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 5266287 - 5266225
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgatacca 110  Q
    |||||||||| ||| |||||||||| | ||| || ||||||||||||||| | ||||||||||    
T  5266287 cactctttgggcttagtgcgtgaatcggtaggtgacccttgaattcgacaggctctgatacca 5266225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 29645992 - 29645928
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||||| ||||||| ||||||   ||| ||||||||||||||||||   ||||||||||||    
T  29645992 cactctttgggcttggtgtgtgaatcagtaggtggcccttgaattcgacagactctgataccata 29645928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 17727426 - 17727311
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||   ||| |||||||||||||||||    
T  17727426 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggtggcccttgaattcgac 17727327  T
Q  97 aagatctgataccata 112  Q
    ||| ||||||||||||    
T  17727326 aagctctgataccata 17727311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 32667201 - 32667093
Alignment:
Q  5 gatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatc 102  Q
    |||||||||||| |||||||| || ||||||||| |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||    
T  32667201 gatgtgggacttcggtttttcccaatacacccccgtcacgcccagcactctttgggcttggtgcgtgaatcggtagatggcccttgaattcgacaagctc 32667102  T
Q  103 tgataccat 111  Q
    |||||||||    
T  32667101 tgataccat 32667093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 29695421 - 29695534
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgaca 97  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||   |||   ||||||||||||||||    
T  29695421 atccgatgtgagacttgggtttttcccaatacaccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcagcccttgaattcgaca 29695520  T
Q  98 agatctgataccat 111  Q
    || |||||||||||    
T  29695521 agctctgataccat 29695534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 884079 - 883965
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  884079 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 883980  T
Q  97 aagatctgataccat 111  Q
    ||| | |||||||||    
T  883979 aagctttgataccat 883965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 40009996 - 40009882
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  40009996 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 40009897  T
Q  97 aagatctgataccat 111  Q
    ||  |||||||||||    
T  40009896 aaactctgataccat 40009882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 33985851 - 33985964
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgaca 97  Q
    ||||||||||||||||||||||||  || |||||||| ||||||||| |||||||||| ||||||||||||||||   |||  |||||||||||||||||    
T  33985851 atccgatgtgggacttgggtttttgccaatacaccccttcacgcccaacactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgaca 33985950  T
Q  98 agatctgataccat 111  Q
    || |||||||||||    
T  33985951 agctctgataccat 33985964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 883683 - 883758
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag 74  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  883683 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaatag 883758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 3435390 - 3435475
Alignment:
Q  28 atacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||||   |||  ||||||||||||||||||| |||||||||||    
T  3435390 atacaccccctcatgcccaacactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctgataccat 3435475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 19860059 - 19859989
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtg 69  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| |||||||||||    
T  19860059 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtg 19859989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 12432127 - 12432013
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    |||||||||||||||||| |||||  || |||||||| ||||||||||||||||||||| |||||||| |||||||   |||  |||||||||||| |||    
T  12432127 atccgatgtgggacttggattttttccaatacaccccgctcacgcccagcactctttgggcttggtgcatgaataggtttaggcggcccttgaatttgac 12432028  T
Q  97 aagatctgataccat 111  Q
    ||| | |||||||||    
T  12432027 aagctttgataccat 12432013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 2465011 - 2464934
Alignment:
Q  34 cccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||| |||||||||| ||||||| ||| |||| ||| |||| ||||||||| ||||| |||||||||||    
T  2465011 cccctcacgcccaacactctttgggcttggtgtgtggataggtaggtggcgcttgaattcaacaagctctgataccat 2464934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 29684238 - 29684124
Alignment:
Q  4 cgatgtgggacttgggtttttctca-tacaccccctc--acgcccagcactctttggacttggtgcgtgaata--gatagatggcccttgaattcgacaa 98  Q
    ||||| || ||||||||||||| || ||||||| |||  || |||| ||||||||||||||||||||||||||    ||| ||| |||||||||||||||    
T  29684238 cgatgcggaacttgggtttttcccaatacaccctctctcactcccaacactctttggacttggtgcgtgaataagtttaggtggtccttgaattcgacaa 29684139  T
Q  99 gatctgataccatat 113  Q
    | |||||||||||||    
T  29684138 gctctgataccatat 29684124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 39108275 - 39108203
Alignment:
Q  39 cacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||| ||||||||||||| |||||||||||||| ||||  |  ||||||||||||||||| |||||||||||    
T  39108275 cacgctcagcactctttgggcttggtgcgtgaatcgataagtaacccttgaattcgacaagctctgataccat 39108203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 33277467 - 33277526
Alignment:
Q  36 cctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcga 95  Q
    ||||||||||| || |||||||| ||||||||||||||| ||| || |||||||||||||    
T  33277467 cctcacgcccaacaatctttggaattggtgcgtgaataggtaggtgacccttgaattcga 33277526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 8044632 - 8044685
Alignment:
Q  5 gatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttgg 57  Q
    |||| |||||||||||||||| || ||||||||||||| |||||||||||||||    
T  8044632 gatgcgggacttgggtttttcccaatacaccccctcacacccagcactctttgg 8044685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 22447322 - 22447230
Alignment:
Q  6 atgtgggacttgggtttttctca-tacaccccctcacgcccagcactc--tttggacttggtgcgtgaatagatagatggcccttgaattcga 95  Q
    |||| ||||||||||||||| || |||||||||||||| |||||||||  ||||| ||||||||||  |||  ||| ||||| ||||||||||    
T  22447322 atgtaggacttgggtttttcccaatacaccccctcacgtccagcactctttttgggcttggtgcgtagatatgtaggtggcctttgaattcga 22447230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 31761324 - 31761247
Alignment:
Q  34 cccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||| |||| |||||||||| ||||| ||||||||   ||| ||||| |||||||||||||| ||||| |||||    
T  31761324 cccctcacacccaacactctttgggcttggggcgtgaatcagtaggtggccattgaattcgacaagctctgaaaccat 31761247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 93672 - 93724
Alignment:
Q  59 cttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||||||||| ||| ||||||||||||| |||||  |||||||||||    
T  93672 cttggtgcgtgaataggtaggtggcccttgaatttgacaaactctgataccat 93724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 8044721 - 8044785
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||||| ||||||  |||||| | ||| |||||||||||||||||||  ||||||||||||    
T  8044721 cactctttgggcttggtttgtgaatcggtaggtggcccttgaattcgacaaactctgataccata 8044785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 25082827 - 25082768
Alignment:
Q  13 acttgggtttttctcat-acaccccctcacgcccagcactctttggacttggtgcgtgaa 71  Q
    |||||| |||||| ||| ||||||||||||||||| |||||||| | |||||||||||||    
T  25082827 acttggatttttcccattacaccccctcacgcccaacactctttagtcttggtgcgtgaa 25082768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10485200 - 10485126
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggac-ttggtgcgtgaat 72  Q
    |||||||||||||| ||| |||||| || ||||||||  |||||||||||||||||||| | |||||||||||||    
T  10485200 atccgatgtgggacatggatttttcccaatacacccctgtcacgcccagcactctttgggctttggtgcgtgaat 10485126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 17265146 - 17265212
Alignment:
Q  46 agcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||||||  |||||||||||||| ||||| || | |||||||||||||   ||||||||||||    
T  17265146 agcactctttgtgcttggtgcgtgaatcgataggtgtctcttgaattcgacagactctgataccata 17265212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 93399 - 93435
Alignment:
Q  59 cttggtgcgtgaatagatagatggcccttgaattcga 95  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  93399 cttggtgcgtgaataggtaggtggcccttgaattcga 93435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 2030092 - 2030159
Alignment:
Q  46 agcactctttggacttggtgcgtgaatagat--agatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||| | |||||||||||||||| |  ||  ||||||||||||||||||| | |||||||||    
T  2030092 agcactcttttggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctttgataccat 2030159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 9264168 - 9264282
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  9264168 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 9264267  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  9264268 aagctctgataccat 9264282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35015507 - 35015395
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    |||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||| | |||| ||||||| | ||| |||||||||||||||||||    
T  35015507 atccgatgtgggacttggctttttcccaatacacccccctcacgcccagcactctttgggcctggtacgtgaatcggtaggtggcccttgaattcgacaa 35015408  T
Q  99 gatctgataccat 111  Q
    | |||||||||||    
T  35015407 gctctgataccat 35015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 9264375 - 9264489
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    |||||||||||||||||| |||||| || |||||||| ||||||||||||| ||||||| ||||||||||||||||   ||| |||||||||||||||||    
T  9264375 atccgatgtgggacttggatttttcccaatacacccccctcacgcccagcagtctttgggcttggtgcgtgaataggtttaggtggcccttgaattcgac 9264474  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  9264475 aagctctgataccat 9264489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 39956553 - 39956663
Alignment:
Q  5 gatgtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaaga 100  Q
    |||||||||||||| |||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||   ||| ||||||||||||||||||||     
T  39956553 gatgtgggacttggatttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggtggcccttgaattcgacaagc 39956652  T
Q  101 tctgataccat 111  Q
    |||||||||||    
T  39956653 tctgataccat 39956663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 21833546 - 21833433
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgaca 97  Q
    |||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||||   |||  ||||||| |||||||||    
T  21833546 atccaatgtgggacttgggtttttctcaatacaccccctcacgaccaacactctttggacttggttcgtgaataggtttaggcggccctttaattcgaca 21833447  T
Q  98 agatctgataccat 111  Q
    || |||||||||||    
T  21833446 agctctgataccat 21833433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 40230516 - 40230628
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    ||||||||||| ||||||||||||| || ||||||||| | ||||||| |||||||||| |||||||||||||||| ||| |||||| ||||||||||||    
T  40230516 atccgatgtggaacttgggtttttcccaatacacccccctaacgcccatcactctttgggcttggtgcgtgaataggtaggtggcccctgaattcgacaa 40230615  T
Q  99 gatctgataccat 111  Q
    | | |||||||||    
T  40230616 gctttgataccat 40230628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 51642517 - 51642624
Alignment:
Q  8 gtgggacttgggtttttctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatct 103  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||||| |||    
T  51642517 gtgggacttgggtttttcgcaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctct 51642616  T
Q  104 gataccat 111  Q
    ||||||||    
T  51642617 gataccat 51642624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 32034318 - 32034204
Alignment:
Q  1 atccgatgtgggacttgggtttttc-tcatacaccccc-tcacgcccagcactctttggactt-ggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    |||||||||||||| | |||||||| | |||||||||| |||||||||||||||||||| ||| ||||||||||| | ||| ||||||||||| ||||||    
T  32034318 atccgatgtgggacataggtttttcctaatacacccccgtcacgcccagcactctttgggcttcggtgcgtgaatcggtaggtggcccttgaaatcgaca 32034219  T
Q  98 agatctgataccata 112  Q
    || ||||||||||||    
T  32034218 agctctgataccata 32034204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 35011881 - 35011772
Alignment:
Q  6 atgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctt--tggacttggtgcgtgaatagatagatggcccttgaattcgacaagat 101  Q
    |||||||||||||||||||| || ||||||||| ||||||||||| |||||  ||||||||||||||| |||| ||| | |||||||||||||||||| |    
T  35011881 atgtgggacttgggtttttcccaatacacccccctcacgcccagctctcttcttggacttggtgcgtggataggtaggtagcccttgaattcgacaagct 35011782  T
Q  102 ctgataccat 111  Q
    ||||||||||    
T  35011781 ctgataccat 35011772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 22407523 - 22407637
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacacc-ccctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    |||||||||||||||| | |||||| || |||||| ||||||||||||||||||||||  ||||||||||||||||   |||  ||||||||||||||||    
T  22407523 atccgatgtgggacttagatttttcccaatacacctccctcacgcccagcactctttgagcttggtgcgtgaataggtttaggcggcccttgaattcgac 22407622  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  22407623 aagctctgataccat 22407637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 33909714 - 33909821
Alignment:
Q  5 gatgtgggacttgggtttttctca-tacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatct 103  Q
    |||||||||||||| ||||| ||| | ||||||||||| |||| |||||||||| |||||| || |||||| ||| |||||||||||||||||||| |||    
T  33909714 gatgtgggacttggatttttttcaatgcaccccctcacacccaacactctttgggcttggtacgcgaataggtaggtggcccttgaattcgacaagctct 33909813  T
Q  104 gataccat 111  Q
     |||||||    
T  33909814 aataccat 33909821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 49477556 - 49477454
Alignment:
Q  1 atccgatgtgggacttgggtttttctcat-acaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| ||  |||||||| |||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  49477556 atccgatgtgggacttgggtttttcccaacacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 49477457  T
Q  97 aag 99  Q
    |||    
T  49477456 aag 49477454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 50692548 - 50692446
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| | ||||||||||||||   |||  ||||||||||||||||    
T  50692548 atccgatgtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcctggtgcgtgaataggtttaggcggcccttgaattcgac 50692449  T
Q  97 aag 99  Q
    |||    
T  50692448 aag 50692446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42258932 - 42258857
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag 74  Q
    |||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  42258932 atccgatgtgggacttggatttttcccaatacacccccatcacgcccagcactctttgggcttggtgcgtgaatag 42258857  T

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Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 27177605 - 27177527
Alignment:
Q  33 ccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||||||| || ||||||| |||||||| ||||||| ||| |||||||||| ||||||||| |||||||||||    
T  27177605 ccccctcacgcccaacattctttgggcttggtgcatgaatagctaggtggcccttgatttcgacaagctctgataccat 27177527  T

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Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 37058684 - 37058760
Alignment:
Q  37 ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||||| |||||||||||    
T  37058684 ctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctgataccat 37058760  T

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Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 37223766 - 37223690
Alignment:
Q  37 ctcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||| ||||||||||||||| ||||||||||||||||   ||| |||||||||||||||||||| |||||||||||    
T  37223766 ctcacccccagcactctttgggcttggtgcgtgaataggtttaggtggcccttgaattcgacaagctctgataccat 37223690  T

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Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 20737219 - 20737135
Alignment:
Q  28 atacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||| | ||| ||||||||||| |||||| | |||||||||||    
T  20737219 atacacccccatcacgcccaacactctttgggcttggtgcgtgaatcggtaggtggcccttgaaatcgacaggctctgataccat 20737135  T

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Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 4191036 - 4191113
Alignment:
Q  38 tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgacaagatctgataccatat 113  Q
    |||||||||||| ||||||| ||||||||||||||||   |||  ||||||||||||||||||| |||||||||||||    
T  4191036 tcacgcccagcattctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgacaagctctgataccatat 4191113  T

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Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 39268959 - 39269072
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaa 98  Q
    ||||||||| |||| | ||||||| ||| |||||| || ||||||||| |||||||||| |||| ||||||||| | ||| ||||||||||| |||| |     
T  39268959 atccgatgtaggacataggtttttttcaatacacctccgtcacgcccaacactctttgggcttgatgcgtgaatcggtaggtggcccttgaaatcgatag 39269058  T
Q  99 gatctgataccata 112  Q
    ||||||||||||||    
T  39269059 gatctgataccata 39269072  T

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Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 53640047 - 53640163
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatagat--agatggcccttgaattcgac 96  Q
    ||||||| |||||||||| |||||| || |||| |||| |||| || |||||||| ||| |||||||||||||||| |  ||  ||||||||||||||||    
T  53640047 atccgatatgggacttggatttttcccaatacaaccccatcacacctagcactctctgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 53640146  T
Q  97 aagatctgataccatat 113  Q
    ||| |||||||||||||    
T  53640147 aagctctgataccatat 53640163  T

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Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 12799855 - 12799792
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||| |||||||||| ||||  |||||| ||||||||||||||||| |||||||||||    
T  12799855 cactctttgggcttggtgcgtaaataagtagatgacccttgaattcgacaagctctgataccat 12799792  T

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Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33798881 - 33798956
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccct-cacgcccagcactctttggacttggtgcgtgaatag 74  Q
    ||||||||||||| ||||||||||  || |||||||||| |||||| |||||||||||| ||||||||||||||||    
T  33798881 atccgatgtgggatttgggttttttccaatacacccccttcacgcctagcactctttgggcttggtgcgtgaatag 33798956  T

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Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 46412144 - 46412227
Alignment:
Q  28 atacaccccctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||||||||| || ||||||| ||||||| |||||||| |||  || |||||||||||||||  | |||||||||    
T  46412144 atacaccccctcacgcccatcattctttgggcttggtgtgtgaataggtaggcggtccttgaattcgacaatctttgataccat 46412227  T

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Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 12800065 - 12799983
Alignment:
Q  32 accccctcacgcccagcactctttggacttggtgcgtgaatagata-gatggcccttgaattcgacaagatctgataccatat 113  Q
    |||||||||||  || |||| |||||||||||||||||||||| || |||| ||||||||||||||||  | |||||||||||    
T  12800065 accccctcacgttcaacactttttggacttggtgcgtgaataggtaggatgacccttgaattcgacaaactttgataccatat 12799983  T

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Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 33799089 - 33799022
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    ||||||||||||| |||||||||||||| ||||| || ||| |||| |||||| | ||||||||||||    
T  33799089 cagcactctttgggcttggtgcgtgaatcgataggtgacccatgaaatcgacaggctctgataccata 33799022  T

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Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 39269479 - 39269416
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||| |||||||||||||| | ||| ||||||||||||||||||   |||||||||||    
T  39269479 cactctttgggcttggtgcgtgaatcggtaggtggcccttgaattcgacagactctgataccat 39269416  T

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Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 40926634 - 40926567
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||||||||||||||||||||||| | ||| || |||||||| |||||| | ||| ||||||||    
T  40926634 cagcactctttggacttggtgcgtgaatcggtaggtgacccttgaaatcgacaggctctaataccata 40926567  T

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Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 44145247 - 44145313
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||||||||| |||||| |||| |||| ||| ||||||||||||| ||| || |||||||||||    
T  44145247 cagcactctttgggcttggtacgtggataggtaggtggcccttgaatttgactagctctgataccat 44145313  T

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Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 25578857 - 25578921
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||||| ||| |||||||||| | ||| || |||||||||||||||  |||||||||||||    
T  25578857 cactctttgggcttagtgcgtgaatcggtaggtgacccttgaattcgacagaatctgataccata 25578921  T

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Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 40926958 - 40926894
Alignment:
Q  48 cactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccata 112  Q
    |||||||||| ||||||||||| || | ||| ||||||||||| |||||| | ||||||||||||    
T  40926958 cactctttgggcttggtgcgtggatcggtaggtggcccttgaaatcgacaggctctgataccata 40926894  T

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Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 32516077 - 32516128
Alignment:
Q  45 cagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgac 96  Q
    ||||||||||||| |||||||||||||| | ||| || ||||||||||||||    
T  32516077 cagcactctttgggcttggtgcgtgaatcggtaggtgacccttgaattcgac 32516128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 13897459 - 13897387
Alignment:
Q  38 tcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    |||||||||||||||||| | ||||||||||| | || | | |||||||| |||| |||||| |||||||||||    
T  13897459 tcacgcccagcactctttaggcttggtgcgtggaaaggttggtggccctttaatt-gacaagctctgataccat 13897387  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 19984483 - 19984558
Alignment:
Q  1 atccgatgtgggacttgggtttttctc-atacaccccc-tcacgcccagcactctttggac--ttggtgcgtgaat 72  Q
    |||||||||||||| || ||||||| | |||||||||| |||| ||||||||||||||| |  |||||||||||||    
T  19984483 atccgatgtgggacatgagtttttcccaatacacccccgtcacacccagcactctttgggcttttggtgcgtgaat 19984558  T

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Target: scaffold0434 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 13535 - 13421
Alignment:
Q  1 atccgatgtgggacttgggtttttctca-tacaccccc-tcacgcccagcactctttggacttggtgcgtgaatag--atagatggcccttgaattcgac 96  Q
    ||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  13535 atccgatttgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggcggcccttgaattcgac 13436  T
Q  97 aagatctgataccat 111  Q
    ||| |||||||||||    
T  13435 aagctctgataccat 13421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1138 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1138
Description:

Target: scaffold1138; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 1955 - 2064
Alignment:
Q  1 atccgatgtgggacttgggttttt-ctca-tacacccc-ctcacgcccagcactctttggacttggtgcgtgaatagatagatggcccttgaattcgaca 97  Q
    |||||||||| ||||||||||||| |||| |||||||| |||||||||| |||||||||| |||||||||||||| | ||| || |||||||||||||||    
T  1955 atccgatgtgagacttgggttttttctcaatacacccccctcacgcccaacactctttgggcttggtgcgtgaatcggtaggtgacccttgaattcgaca 2054  T
Q  98 agatctgata 107  Q
    |  |||||||    
T  2055 aactctgata 2064  T

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Target: scaffold0027 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 121490 - 121439
Alignment:
Q  60 ttggtgcgtgaatagatagatggcccttgaattcgacaagatctgataccat 111  Q
    ||||||| ||||| | ||| |||||||||||||||||||| |||||||||||    
T  121490 ttggtgcatgaatcggtaggtggcccttgaattcgacaagctctgataccat 121439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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