View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11871_high_39 (Length: 236)

Name: NF11871_high_39
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11871_high_39
NF11871_high_39
[»] chr4 (7 HSPs)
chr4 (1-230)||(53790501-53790730)
chr4 (53-141)||(3560940-3561028)
chr4 (48-132)||(53774835-53774919)
chr4 (48-142)||(11970963-11971057)
chr4 (53-134)||(3565744-3565825)
chr4 (48-135)||(11981671-11981758)
chr4 (53-134)||(3557726-3557807)
[»] chr6 (6 HSPs)
chr6 (25-209)||(24254340-24254524)
chr6 (77-135)||(17369688-17369746)
chr6 (48-142)||(20770645-20770739)
chr6 (77-121)||(6921352-6921396)
chr6 (77-121)||(6947882-6947926)
chr6 (77-133)||(6954509-6954565)
[»] chr7 (12 HSPs)
chr7 (49-226)||(19344472-19344649)
chr7 (47-134)||(12819905-12819992)
chr7 (25-215)||(19325887-19326083)
chr7 (77-226)||(19374780-19374929)
chr7 (48-151)||(660819-660922)
chr7 (77-140)||(14076702-14076765)
chr7 (77-140)||(14386730-14386793)
chr7 (48-121)||(19604465-19604538)
chr7 (59-137)||(29859460-29859538)
chr7 (46-132)||(35205915-35206001)
chr7 (43-135)||(29874501-29874593)
chr7 (53-121)||(29899374-29899442)
[»] chr5 (7 HSPs)
chr5 (48-144)||(29642354-29642450)
chr5 (48-143)||(29647671-29647766)
chr5 (43-144)||(29597531-29597632)
chr5 (48-140)||(18964813-18964905)
chr5 (184-224)||(28763801-28763841)
chr5 (181-229)||(29597464-29597512)
chr5 (181-229)||(29647796-29647844)
[»] chr3 (1 HSPs)
chr3 (56-141)||(3625737-3625822)
[»] chr2 (5 HSPs)
chr2 (45-134)||(18913546-18913635)
chr2 (52-134)||(18908798-18908880)
chr2 (52-134)||(18920754-18920836)
chr2 (41-133)||(5436811-5436903)
chr2 (77-141)||(14514924-14514988)
[»] chr1 (3 HSPs)
chr1 (59-119)||(31442975-31443035)
chr1 (48-135)||(39379049-39379136)
chr1 (48-156)||(4366462-4366570)
[»] scaffold0464 (1 HSPs)
scaffold0464 (43-135)||(8051-8143)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 53790501 - 53790730
Alignment:
Q  1 attgctgtcttaatggattgtttgtgtttttgtcactttgttaagggaactcattttattatatggaagatgacaaaatttggatttgaacaatcctgga 100  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53790501 attgctgtcttaatggattgtttgtgtttttctcactatgttaagagaactcattttattatatggaagatgacaaaatttggatttgaacaatcttgga 53790600  T
Q  101 ctcaatttcttaaaattagttttcagaatcttcaagtagataataattttagtgactggaatcagtatcagacatttatgttcccattgtgtctttcaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  53790601 ctcaatttcttaaaattagttttcagaatcttcaagtagataataattttagtgactggaatcagtatcagacatttatgttcccattgtgtctttctga 53790700  T
Q  201 gaatggtgagacactgatattggcaagctc 230  Q
    ||||||||||||||||||||||||||||||    
T  53790701 gaatggtgagacactgatattggcaagctc 53790730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 3561028 - 3560940
Alignment:
Q  53 attttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagat 141  Q
    |||||||||| ||| |||||| |||||||||  ||||| | || ||||||||||||||||||||||||| |||  |||||||| |||||    
T  3561028 attttattatttggcagatgaaaaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttcaattagat 3560940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 53774835 - 53774919
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatctt 132  Q
    |||||||||| |||||||| | ||||   |||||||| ||||| | || ||||||||||| ||||||||||||| ||||||||||    
T  53774835 aactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttatcagaatctt 53774919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 11971057 - 11970963
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagata 142  Q
    |||||||||| |||||||| | ||||   |||||||| | ||| | || |||||||||||||||| |||||||| ||| ||||||||| ||||||    
T  11971057 aactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttcaaatagata 11970963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 3565744 - 3565825
Alignment:
Q  53 attttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttca 134  Q
    |||||||||||||| ||||||   |||||||  ||||| | || ||||||||||||||||||||||||| |||  |||||||    
T  3565744 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3565825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 11981758 - 11981671
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaa 135  Q
    |||||||||| |||||||| | ||||   |||||||| | ||| | |||||||||| ||||||||||||||||| ||  |||||||||    
T  11981758 aactcattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttatcttaatcttcaa 11981671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 3557726 - 3557807
Alignment:
Q  53 attttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttca 134  Q
    |||||||||||||| | ||||   |||||||  ||||| | || ||||||||||||||||||||||||| |||  |||||||    
T  3557726 attttattatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3557807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 24254524 - 24254340
Alignment:
Q  25 tgtttttgtcactttgttaagggaactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttc 124  Q
    ||||||| ||||| | | ||| ||||||||||| |||||||| ||||| |  |||||||| | |||||||| |||||||||||  | ||||| ||||||     
T  24254524 tgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactcaattcatcaaaatcagttttg 24254425  T
Q  125 agaatcttcaagtagataataattttagtgactggaatcagtatcagacatttatgttcccattgtgtctttcagagaatggtga 209  Q
    ||||| ||||||||||| |||  ||||||||||||||||  |||||  | ||||||||||||||||||||||| |||||||||||    
T  24254424 agaatgttcaagtagatgataggtttagtgactggaatcgttatcaatcgtttatgttcccattgtgtctttctgagaatggtga 24254340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 17369688 - 17369746
Alignment:
Q  77 aatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaa 135  Q
    |||||||| ||||| | || ||||||||||||||||||||||||| |||||||||||||    
T  17369688 aatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaa 17369746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 20770645 - 20770739
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagata 142  Q
    |||| ||||| |||||||| | ||||   |||||||| ||||| | || |||| |||||| ||||||||||||| ||| ||||||||| ||||||    
T  20770645 aacttattttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttcaaatagata 20770739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 6921396 - 6921352
Alignment:
Q  77 aatttggatttgaacaatcctggactcaatttcttaaaattagtt 121  Q
    |||||||| ||||| |||| ||||||||||| |||||||||||||    
T  6921396 aatttggagttgaagaatcttggactcaattccttaaaattagtt 6921352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 6947926 - 6947882
Alignment:
Q  77 aatttggatttgaacaatcctggactcaatttcttaaaattagtt 121  Q
    |||||||| ||||| |||| ||||||||||| |||||||||||||    
T  6947926 aatttggagttgaagaatcttggactcaattccttaaaattagtt 6947882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 6954565 - 6954509
Alignment:
Q  77 aatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttc 133  Q
    |||||||| ||||| |||| |||||||||||  ||||||||||||||| || |||||    
T  6954565 aatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttc 6954509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 226
Target Start/End: Complemental strand, 19344649 - 19344472
Alignment:
Q  49 actcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagataataatt 148  Q
    ||||||||| |||||||| ||||||   |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||  ||| |||  |    
T  19344649 actcattttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaattagttttcagaatcttctaggggatgataggt 19344550  T
Q  149 ttagtgactggaatcagtatcagacatttatgttcccattgtgtctttcagagaatggtgagacactgatattggcaa 226  Q
    |||||||| ||| | | | ||     |||||||| |||||||| |||||  | |||||||| |||||| |||||||||    
T  19344549 ttagtgaccggatttattgtccatattttatgtttccattgtggctttctaaaaatggtgatacactgctattggcaa 19344472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 12819992 - 12819905
Alignment:
Q  47 gaactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttca 134  Q
    ||||| ||||| || ||||| |||||||  |||||||| |||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  12819992 gaacttattttgttgtatggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaatcagttgtcagaatcttca 12819905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 19326083 - 19325887
Alignment:
Q  25 tgtttttgtcactttgttaagggaactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttc 124  Q
    ||||||| ||||| | | ||| ||||||||||| |||||||| | ||| |  |||||||| | |||||||| |||||||||||  | ||||| |||||||    
T  19326083 tgtttttctcactatatcaagagaactcattttgttatatggcatatgtcggaatttggagtagaacaatcttggactcaattcatcaaaatcagttttc 19325984  T
Q  125 agaatcttcaagtagataa------taattttagtgactggaatcagtatcagacatttatgttcccattgtgtctttcagagaatggtgagacact 215  Q
    ||||| ||||||||||| |      ||  ||||| ||||||  ||| |||||  |  |||||||||||||||||||||| |||||| |||| |||||    
T  19325983 agaatgttcaagtagatgataggtttaggtttagcgactggtttcattatcaatcgcttatgttcccattgtgtctttctgagaatagtgatacact 19325887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 19374780 - 19374929
Alignment:
Q  77 aatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagataataattttagtgactggaatcagtatcagacatt 176  Q
    |||||||| ||||||  || ||||||||||||||||||||||||||  ||||||||  ||| ||| |||  ||||||||| ||| | | |||||    ||    
T  19374780 aatttggagttgaacggtcttggactcaatttcttaaaattagtttaaagaatcttttagtggatgataggtttagtgaccggatttattatcaatgttt 19374879  T
Q  177 tatgttcccattgtgtctttcagagaatggtgagacactgatattggcaa 226  Q
    |||||| |||||||| |||||  | |||||||| |||||| |||||||||    
T  19374880 tatgtttccattgtggctttctaaaaatggtgatacactgctattggcaa 19374929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 660922 - 660819
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagataataat 147  Q
    ||||| |||| |||||||| ||||||   ||||| || ||||| | || ||||||||||| ||||||||||||| ||| ||||||||| ||||||||||     
T  660922 aactcgttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaatagataataac 660823  T
Q  148 ttta 151  Q
    ||||    
T  660822 ttta 660819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 14076702 - 14076765
Alignment:
Q  77 aatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtaga 140  Q
    |||||||| ||||| | || ||||||||||||||||||||||||| ||||||||||||| ||||    
T  14076702 aatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaataga 14076765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 14386730 - 14386793
Alignment:
Q  77 aatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtaga 140  Q
    |||||||| ||||| | || ||||||||||||||||||||||||| ||||||||||||| ||||    
T  14386730 aatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaataga 14386793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 19604538 - 19604465
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagtt 121  Q
    |||||| |||||||||||| ||||||   |||||||| ||||| | |||||||||||||| |||||||||||||    
T  19604538 aactcactttattatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtt 19604465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 29859460 - 29859538
Alignment:
Q  59 ttatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagt 137  Q
    |||||||| ||||||  ||||||||| ||||| | || ||||| | ||||||||||||||||| ||| |||||||||||    
T  29859460 ttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagttatcacaatcttcaagt 29859538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 35206001 - 35205915
Alignment:
Q  46 ggaactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatctt 132  Q
    |||||| ||||| ||||||||||||||||| ||||||||  |||  | || ||||||||||| |||||| |||| | ||| ||||||    
T  35206001 ggaactgattttgttatatggaagatgacagaatttggaaatgacaagtcttggactcaattccttaaatttagctatcacaatctt 35205915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 29874501 - 29874593
Alignment:
Q  43 aagggaactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaa 135  Q
    |||| |||| |||| ||||||||| | ||||  ||||||||  ||||| | || ||||||| ||| ||||||||||||| ||| |||||||||    
T  29874501 aaggaaactgatttcattatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagttatcaaaatcttcaa 29874593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 29899374 - 29899442
Alignment:
Q  53 attttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagtt 121  Q
    ||||| |||||||| ||||||  ||||||||  ||||| | ||||||||||||||| | ||||||||||    
T  29899374 attttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaattagtt 29899442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 29642354 - 29642450
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagataat 144  Q
    |||||||||  |||||||| | |||| | ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  29642354 aactcatttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagttttcagaatctactagtagataat 29642450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 29647671 - 29647766
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagataa 143  Q
    |||||||||| |||||||| | |||| | ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| | |||||||||    
T  29647671 aactcattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagttttcaaaatctactagtagataa 29647766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 29597632 - 29597531
Alignment:
Q  43 aagggaactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagata 142  Q
    |||| |||||||||| |||||||| | ||||   |||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||| || |||||||    
T  29597632 aaggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagttttcaaaatctacaggtagata 29597533  T
Q  143 at 144  Q
    ||    
T  29597532 at 29597531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 18964905 - 18964813
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtaga 140  Q
    ||||||||| ||||||||| | ||||   |||||||| ||||| | || ||||||||||||||||||||| ||| ||||||||||||| ||||    
T  18964905 aactcatttcattatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaaataga 18964813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 28763841 - 28763801
Alignment:
Q  184 ccattgtgtctttcagagaatggtgagacactgatattggc 224  Q
    |||||||||||||| ||||||||||| | ||||||||||||    
T  28763841 ccattgtgtctttccgagaatggtgataaactgatattggc 28763801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 29597512 - 29597464
Alignment:
Q  181 ttcccattgtgtctttcagagaatggtgagacactgatattggcaagct 229  Q
    |||||||| |||||||| ||||||||||| ||| ||||||| |||||||    
T  29597512 ttcccattctgtctttctgagaatggtgaaacattgatattcgcaagct 29597464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 29647796 - 29647844
Alignment:
Q  181 ttcccattgtgtctttcagagaatggtgagacactgatattggcaagct 229  Q
    |||||||| |||||||| ||||||||||| ||| ||||||| |||||||    
T  29647796 ttcccattctgtctttctgagaatggtgaaacattgatattcgcaagct 29647844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 3625737 - 3625822
Alignment:
Q  56 ttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagat 141  Q
    ||||||||||| | ||||  ||||||||  ||||| | || ||||||||||||||||||||||||| ||| ||||||||| |||||    
T  3625737 ttattatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcaaaatcttcaattagat 3625822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 18913635 - 18913546
Alignment:
Q  45 gggaactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttca 134  Q
    |||||| |||||| |||||||||||||||   |||||||| || || | || ||||||||||| || |||||||||||||| ||||||||    
T  18913635 gggaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 18913546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 18908880 - 18908798
Alignment:
Q  52 cattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttca 134  Q
    |||||| |||||||||||||||   |||||||| || || | || ||||||||||| || |||||||||||||| ||||||||    
T  18908880 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 18908798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 18920836 - 18920754
Alignment:
Q  52 cattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttca 134  Q
    |||||| |||||||||||||||   |||||||| || || | || ||||||||||| || |||||||||||||| ||||||||    
T  18920836 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 18920754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 5436903 - 5436811
Alignment:
Q  41 ttaagggaactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttc 133  Q
    |||||||||| ||| ||||||||||| |||||||||||| |||| ||||  | || |||| ||||||  | |||||||||  |||||||||||    
T  5436903 ttaagggaacccatcttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagtcatcagaatcttc 5436811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 14514924 - 14514988
Alignment:
Q  77 aatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagat 141  Q
    |||||||| ||||| | || ||||||||||| ||||||||||||| |  |||||||||| |||||    
T  14514924 aatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaatagat 14514988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 31443035 - 31442975
Alignment:
Q  59 ttatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattag 119  Q
    ||||||||||||||||||||||||||  |||| | || ||| ||||||| |||||||||||    
T  31443035 ttatatggaagatgacaaaatttggagatgaaaagtcgtgggctcaattacttaaaattag 31442975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 39379136 - 39379049
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaa 135  Q
    |||| |||||||||||||| ||||||   |||||||  ||||| | || |||||||||||||||||||| |||| |||  ||||||||    
T  39379136 aactgattttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagttatcatgatcttcaa 39379049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 4366570 - 4366462
Alignment:
Q  48 aactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaagtagataataat 147  Q
    |||| ||||| || ||||| ||||||  ||||| ||  ||||| | || ||||||| |||||||||| ||||||  |||||||||||| ||||| | ||     
T  4366570 aactgattttgttttatggcagatgaagaaattcggggttgaagagtcttggactccatttcttaaagttagttaccagaatcttcaaatagattacaac 4366471  T
Q  148 tttagtgac 156  Q
    |||||||||    
T  4366470 tttagtgac 4366462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 8051 - 8143
Alignment:
Q  43 aagggaactcattttattatatggaagatgacaaaatttggatttgaacaatcctggactcaatttcttaaaattagttttcagaatcttcaa 135  Q
    |||||||| |||||| || |||||| |||||   |||| ||| || || | || |||| ||||||||| ||||||||||||||| ||||||||    
T  8051 aagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaa 8143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University