View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_10 (Length: 460)
Name: NF11871_low_10
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_10 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 45419605 - 45420067
Alignment:
| Q |
1 |
gaggtggtgcccatgcgtcacagtgaagtcaatcatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagaaggattcctgaaatc |
100 |
Q |
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|||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
45419605 |
gaggtggtgcacatgcgtcacattgaagtcaaccatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagaaggatacctaaaatc |
45419704 |
T |
|
| Q |
101 |
catattagcttgaaaaacta----------agacaacttatgcccttctacagataaaactaagaaacaaagaacat--------caatgtagaattcag |
182 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
45419705 |
catattagcttgaaaaactagttaagactaagacaacttatgcccttctacagataaaactaagaaacaaagaacaaagacattacagtgtagaattcag |
45419804 |
T |
|
| Q |
183 |
ttgaagatatcctcta--gattatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgttg |
280 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45419805 |
ttgaagatatcctctatagattatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgatg |
45419904 |
T |
|
| Q |
281 |
ataacttggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccct |
380 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45419905 |
gtaacctggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccct |
45420004 |
T |
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| Q |
381 |
ccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaac |
443 |
Q |
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| T |
45420005 |
ccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaac |
45420067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 202 - 443
Target Start/End: Original strand, 45410517 - 45410758
Alignment:
| Q |
202 |
tatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaaccttaaa |
301 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410517 |
tatcctaattaaggggttgaacaatgagtggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaaccttaaa |
45410616 |
T |
|
| Q |
302 |
agtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaatac |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410617 |
agtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaatac |
45410716 |
T |
|
| Q |
402 |
cccatcttgtgtttgcatccaccattaacatcatccatgaac |
443 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410717 |
cccatcttgtgtttgcatccaccattaacatcatccatgaac |
45410758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 219 - 442
Target Start/End: Original strand, 29799598 - 29799821
Alignment:
| Q |
219 |
tgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaaccttaaaagtgaagttagagagaa |
318 |
Q |
| |
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||||| || ||||||||||||| |||||||||||| |||||||| || |||||||| |||| |||| |||| |||||| | || ||||||||| |
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| T |
29799598 |
tgaacgattagaggaagtccataagctggccttagtgagagcataatacaaggtgaatgaatataatttggggaaatattaaaactaaatctagagagaa |
29799697 |
T |
|
| Q |
319 |
gtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtttgca |
418 |
Q |
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| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || || ||||| |
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| T |
29799698 |
gaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttggttgca |
29799797 |
T |
|
| Q |
419 |
tccaccattaacatcatccatgaa |
442 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
29799798 |
tccaccatttacatcatccatgaa |
29799821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 171 - 436
Target Start/End: Original strand, 26834986 - 26835251
Alignment:
| Q |
171 |
tgtagaattcagttgaagatatcctctagattatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctg |
270 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26834986 |
tgtagaattgagttgaagatatcctctagattatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctg |
26835085 |
T |
|
| Q |
271 |
gtgaatgttgataacttggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacaca |
370 |
Q |
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||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835086 |
gtgaatgatggtaacctggcgaaaccttaaaagtgaagttagagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacaca |
26835185 |
T |
|
| Q |
371 |
cattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatc |
436 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835186 |
cattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatc |
26835251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 26834827 - 26834946
Alignment:
| Q |
1 |
gaggtggtgcccatgcgtcacagtgaagtcaatcatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagaaggattcctgaaatc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26834827 |
gaggtggtgcacatgcgtcacagtgaagtcaatcatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagaaggattcctaaaatc |
26834926 |
T |
|
| Q |
101 |
catattagcttgaaaaacta |
120 |
Q |
| |
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|||||||||||||||||||| |
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| T |
26834927 |
catattagcttgaaaaacta |
26834946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 443
Target Start/End: Original strand, 63457 - 63585
Alignment:
| Q |
315 |
agaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtt |
414 |
Q |
| |
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||||||| ||||||||||| || |||||||| || ||||||| ||||||| ||| |||||||||||| |||||||| || |||||||| |||| | |
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| T |
63457 |
agaagtagggttaacactatgttatactccatgaagatcaagttcctaccaatacatgctctccctccaaaaccaaaaggcaagtaccccattgtgtggt |
63556 |
T |
|
| Q |
415 |
tgcatccaccattaacatcatccatgaac |
443 |
Q |
| |
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|||| | ||||| |||||| ||||||| |
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| T |
63557 |
ggcattccccattggcatcattcatgaac |
63585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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