View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11871_low_12 (Length: 446)

Name: NF11871_low_12
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11871_low_12
NF11871_low_12
[»] chr3 (29 HSPs)
chr3 (55-348)||(22468229-22468522)
chr3 (22-368)||(22368160-22368506)
chr3 (76-433)||(22431454-22431807)
chr3 (44-348)||(22630709-22631013)
chr3 (73-433)||(22358301-22358661)
chr3 (126-387)||(22632217-22632478)
chr3 (73-433)||(22635802-22636162)
chr3 (81-281)||(22443046-22443246)
chr3 (44-203)||(22354081-22354242)
chr3 (73-266)||(22458788-22458981)
chr3 (73-266)||(22481769-22481962)
chr3 (134-284)||(22027956-22028106)
chr3 (44-216)||(22436904-22437076)
chr3 (134-284)||(22186944-22187094)
chr3 (134-271)||(21930390-21930527)
chr3 (134-271)||(22034486-22034623)
chr3 (134-271)||(22052702-22052839)
chr3 (134-271)||(22179386-22179523)
chr3 (74-283)||(22615559-22615768)
chr3 (76-236)||(21937157-21937317)
chr3 (76-271)||(22115054-22115249)
chr3 (83-293)||(22207967-22208177)
chr3 (76-236)||(21945628-21945788)
chr3 (85-284)||(22104679-22104878)
chr3 (134-235)||(22648518-22648619)
chr3 (74-185)||(2797451-2797562)
chr3 (123-182)||(2818650-2818709)
chr3 (399-433)||(22437256-22437290)
chr3 (74-182)||(2769162-2769270)
[»] chr4 (1 HSPs)
chr4 (189-293)||(29610972-29611075)
[»] chr8 (1 HSPs)
chr8 (134-182)||(27294606-27294654)
[»] chr1 (3 HSPs)
chr1 (85-278)||(34975344-34975537)
chr1 (73-275)||(34980125-34980329)
chr1 (85-237)||(34989220-34989372)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 55 - 348
Target Start/End: Original strand, 22468229 - 22468522
Alignment:
Q  55 ctcaacaaattttttattttgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggcta 154  Q
    |||||||| |||| ||| ||||||||| ||||||| ||||||||||||||||||||||| |  ||||| |||||||||||||||||||||||||||||||    
T  22468229 ctcaacaatttttctatattgtatggtcgagacaccgtgatccatacatgacaatcaaaatgtttaacgaccttttggttgtcaaaaactttcttggcta 22468328  T
Q  155 gagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttc 254  Q
     |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22468329 tagtggtttttcccagtcctcccattccaactatggagacaacggtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcgtggctcttc 22468428  T
Q  255 aaatcccacaacttcagattcatccatgtacaatggagcgtcacgaagtttctgcaataatacggcatttttgtttgtttcaggactgcttgat 348  Q
    |||||||||||  |||| ||||||||| || ||||||||||| ||||| |||||||| |||  ||| ||| |||||||| ||| ||||||||||    
T  22468429 aaatcccacaagatcagcttcatccatataaaatggagcgtctcgaaggttctgcaaaaatgaggcgtttctgtttgttgcagaactgcttgat 22468522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 368
Target Start/End: Original strand, 22368160 - 22368506
Alignment:
Q  22 tgaggaggatctttcctttgttgcaatatgtcactcaacaaattttttattttgtatggttgagacactgtgatccatacatgacaatcaaagttcttaa 121  Q
    |||||||||  ||||| |||||||| ||||||  ||| ||| |||| | | || |||||| |||| || |||||||||| | ||||||||||||  ||||    
T  22368160 tgaggaggacatttcccttgttgcagtatgtccttcagcaatttttctttattatatggtcgagaaaccgtgatccataaacgacaatcaaagtgtttaa 22368259  T
Q  122 ctaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctac 221  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  22368260 cgaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcggtgtgctcttccctctac 22368359  T
Q  222 caacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcagattcatccatgtacaatggagcgtcacgaagtttctgcaataatacggca 321  Q
    |||||||||||||||||||||||||| | | |||||||| ||  | ||||  ||||||||||| | |||||| || ||||| ||||| ||||||  ||||    
T  22368360 caacaaatcaatcaatttgtctcttgacacatcaaatcctaccgcatcagcatcatccatgtaaagtggagcatctcgaaggttctgaaataatgaggca 22368459  T
Q  322 tttttgtttgtttcaggactgcttgatccattttccaatgaagattg 368  Q
    ||| |||||||| ||| ||| |||||| | || ||||| ||||||||    
T  22368460 tttctgtttgttgcagaactacttgatgctttatccaaagaagattg 22368506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 76 - 433
Target Start/End: Original strand, 22431454 - 22431807
Alignment:
Q  76 tatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctc 175  Q
    ||||||||||||||||||||||||| | ||||||||||||  ||||  ||| | | |||||||||||||||||||| |||||||||||||||||||||||    
T  22431454 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 22431553  T
Q  176 ccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcagattc 275  Q
    |||||||| |||||||||| |||||| ||||| || |||| | ||||| | ||||||||||| |||||||||||||||||||||||||||| |||| |||    
T  22431554 ccattcca-caatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttc 22431652  T
Q  276 atccatgtacaatggagcgtcacgaagtttctgcaataatacggcatttttgtttgtttcaggactgcttgatccattttccaatgaagattgaatttga 375  Q
    |||||| || ||||||||||| ||||| |||| |||||||  ||| ||| |||||||| ||| |||  ||||| | || ||| | |||||||| || ||     
T  22431653 atccatataaaatggagcgtcccgaagattcttcaataatgaggcgtttctgtttgttgcagaactagttgatgctttatccgaagaagattggatatgg 22431752  T
Q  376 aagccatgatctcttttagtatgtgtatcttctatttcactcattcgggatttgatgt 433  Q
    |||||||||||| ||| | |   |||||||| ||||||||| ||||||||||||||||    
T  22431753 aagccatgatctttttcact---tgtatcttttatttcactaattcgggatttgatgt 22431807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 44 - 348
Target Start/End: Original strand, 22630709 - 22631013
Alignment:
Q  44 gcaatatgtcactcaacaaattttttattttgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaac 143  Q
    |||| ||||| ||||||||  ||| ||| ||||||||| ||||||| ||||||||| |||||||||||||||  ||||| |||||| ||||||||||||     
T  22630709 gcaaaatgtccctcaacaatgtttctatattgtatggtcgagacaccgtgatccattcatgacaatcaaagtgtttaacgacctttcggttgtcaaaaat 22630808  T
Q  144 tttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtct 243  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || | |||||||||||||||||    
T  22630809 tttcttggcaagagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtct 22630908  T
Q  244 cttggctcttcaaatcccacaacttcagattcatccatgtacaatggagcgtcacgaagtttctgcaataatacggcatttttgtttgtttcaggactgc 343  Q
    | |||||| ||||| |||||||| |||| ||||||||  ||||||||||| || ||||| ||||| ||||||  ||  ||| |||||||| ||| ||| |    
T  22630909 cgtggctcgtcaaagcccacaacatcagcttcatccaaatacaatggagcatctcgaaggttctggaataatgaggtgtttctgtttgttgcagaactac 22631008  T
Q  344 ttgat 348  Q
    |||||    
T  22631009 ttgat 22631013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 73 - 433
Target Start/End: Original strand, 22358301 - 22358661
Alignment:
Q  73 ttgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtc 172  Q
    ||||||||| ||||||| || ||||||||| ||| ||||||||  || || |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  22358301 ttgtatggtcgagacaccgtaatccatacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtc 22358400  T
Q  173 ctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcaga 272  Q
    |||||||||||||||||||||||| ||| || |||||||||||  ||||||| |||||||||||||||||||||| ||  |||||||| ||||| ||||     
T  22358401 ctcccattccaacaatggagacaattgtccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctcttgtcttatcaaatcctacaacatcagc 22358500  T
Q  273 ttcatccatgtacaatggagcgtcacgaagtttctgcaataatacggcatttttgtttgtttcaggactgcttgatccattttccaatgaagattgaatt 372  Q
    |||| ||||||| | ||||||||| ||||| ||||| ||||||  ||| ||| |||||||| ||  |||  ||||| | || ||| | |||||||| ||     
T  22358501 ttcaaccatgtaaagtggagcgtctcgaaggttctgaaataatgaggcgtttctgtttgttgcataactagttgatgctttatccgaagaagattggata 22358600  T
Q  373 tgaaagccatgatctcttttagtatgtgtatcttctatttcactcattcgggatttgatgt 433  Q
    |  |||||||||||| ||| |||   |||||| | ||||||||| ||||||||||||||||    
T  22358601 tagaagccatgatctttttcagttcttgtatcatttatttcacttattcgggatttgatgt 22358661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 126 - 387
Target Start/End: Original strand, 22632217 - 22632478
Alignment:
Q  126 cttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaac 225  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |    
T  22632217 ctttcggttgtcaaaaactttcttggctagagtggttttccccagtcctcccattccaataatggagacaactgtgcgatctgctcttccctctaccagc 22632316  T
Q  226 aaatcaatcaatttgtctcttggctcttcaaatcccacaacttcagattcatccatgtacaatggagcgtcacgaagtttctgcaataatacggcatttt 325  Q
     ||| ||| | ||| ||| |||||||||||||||||||||| |||| ||||||||| || ||||||||||| ||||| ||||||||||||  |||||||     
T  22632317 caattaattagtttctctattggctcttcaaatcccacaacatcagcttcatccatataaaatggagcgtctcgaaggttctgcaataatgaggcatttc 22632416  T
Q  326 tgtttgtttcaggactgcttgatccattttccaatgaagattgaatttgaaagccatgatct 387  Q
    |||||||| ||| ||| ||||||   || ||| | |||||||| || || ||||||||||||    
T  22632417 tgtttgttgcagaactacttgatggtttatccgaagaagattggatgtggaagccatgatct 22632478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 73 - 433
Target Start/End: Original strand, 22635802 - 22636162
Alignment:
Q  73 ttgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtc 172  Q
    ||||||||| ||||||| || ||||||||| ||||||||||||  || || |||||| ||||||||||||||||||| |||||||||||||||||  |||    
T  22635802 ttgtatggtcgagacaccgtaatccatacacgacaatcaaagtattttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttccttgtc 22635901  T
Q  173 ctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcaga 272  Q
    ||||||||||||  |||||||||| ||| || |||||||||||| ||||||| | ||||||||||| |||||||||||  |||||||| ||||| ||||     
T  22635902 ctcccattccaaagatggagacaattgtccggtctgctcttcccgctaccaaaagatcaatcaattcgtctcttggcttatcaaatcctacaacatcagc 22636001  T
Q  273 ttcatccatgtacaatggagcgtcacgaagtttctgcaataatacggcatttttgtttgtttcaggactgcttgatccattttccaatgaagattgaatt 372  Q
    |||| ||||||| | ||||||||| ||||| ||||| |||| |  ||| ||| |||||||| ||| |||  ||||| | || ||| |||||||||| ||     
T  22636002 ttcaaccatgtaaagtggagcgtctcgaaggttctgaaatagtgaggcgtttctgtttgttgcagaactagttgatgctttatccgatgaagattggata 22636101  T
Q  373 tgaaagccatgatctcttttagtatgtgtatcttctatttcactcattcgggatttgatgt 433  Q
    |  |||||||||||| ||| |||   |||||| | ||||||||| ||||||||||||||||    
T  22636102 tagaagccatgatctttttcagttcttgtatcatttatttcacttattcgggatttgatgt 22636162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 81 - 281
Target Start/End: Original strand, 22443046 - 22443246
Alignment:
Q  81 ttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccatt 180  Q
    |||||||||  ||||||||| | |||| ||||||| |||||||||||||||||||||||||| ||   ||||||||||||||||||||| ||||||||||    
T  22443046 ttgagacaccatgatccataaaagacagtcaaagtgcttaactaccttttggttgtcaaaaatttgtctggctagagtggtttttcccaatcctcccatt 22443145  T
Q  181 ccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcagattcatcca 280  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  |||| ||||||||    
T  22443146 ccaacaatggagacaactgtgcggtcttctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaagccaacaatatcagcttcatcca 22443245  T
Q  281 t 281  Q
    |    
T  22443246 t 22443246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 22354081 - 22354242
Alignment:
Q  44 gcaatatgtcactcaacaaattttttattttgtatggttgagacactgtgatccata--catgacaatcaaagttcttaactaccttttggttgtcaaaa 141  Q
    |||| ||||| |||||||  |||| ||| ||||||||| |||| || ||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  22354081 gcaaaatgtccctcaacactttttctatgttgtatggtcgagataccgtgatccatatacataacaatcaaagttcttaactaccttttggttgtcaaaa 22354180  T
Q  142 actttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcg 203  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22354181 acttttctggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcg 22354242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 73 - 266
Target Start/End: Original strand, 22458788 - 22458981
Alignment:
Q  73 ttgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtc 172  Q
    ||||||| |||||||||| ||||||||||||||||||||||||  ||||| | ||| | || ||||||||| ||||| || ||||| ||||||||  |||    
T  22458788 ttgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtc 22458887  T
Q  173 ctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaac 266  Q
    ||||| |||||||||||| ||||| |||| || || ||||  |||||| |||| ||||||| | | ||||||||||  ||||||| || |||||    
T  22458888 ctccctttccaacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaagcctacaac 22458981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 73 - 266
Target Start/End: Original strand, 22481769 - 22481962
Alignment:
Q  73 ttgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtc 172  Q
    ||||||| |||||||||| ||||||||||||||||||||||||  ||||| | ||| | || ||||||||| ||||| || ||||| ||||||||  |||    
T  22481769 ttgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtc 22481868  T
Q  173 ctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaac 266  Q
    ||||| |||||||||||| ||||| |||| || || ||||  |||||| |||| ||||||| | | ||||||||||  ||||||| || |||||    
T  22481869 ctccctttccaacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaagcctacaac 22481962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 284
Target Start/End: Complemental strand, 22028106 - 22027956
Alignment:
Q  134 tgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaat 233  Q
    ||||||||||||||||||||||||| ||||||||  | ||||||||||| || |  || || || ||||||||| | ||||||| ||||||| ||||| |    
T  22028106 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccaaccaatcagt 22028007  T
Q  234 caatttgtctcttggctcttcaaatcccacaacttcagattcatccatgta 284  Q
    |||| | | ||||||| |||||||||||||||| |||| ||| || |||||    
T  22028006 caatctttttcttggcgcttcaaatcccacaacctcagcttcctcgatgta 22027956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 22436904 - 22437076
Alignment:
Q  44 gcaatatgtcactcaacaaattttttattttgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaac 143  Q
    |||| ||||| |||||||| |||| | |  |||||| ||||||||||||||||||||||||||| ||||| |  || |  || ||   ||| ||||||||    
T  22436904 gcaaaatgtccctcaacaatttttctttactgtatgattgagacactgtgatccatacatgacagtcaaattgttttaagactttgatgttctcaaaaac 22437003  T
Q  144 tttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccc 216  Q
    ||||||||| ||||| ||||||||  | ||||||||||| ||||| ||||||||||  |||||| ||||||||    
T  22437004 tttcttggccagagtagtttttccttgccctcccattcctacaatagagacaactgcacgctctactcttccc 22437076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 134 - 284
Target Start/End: Complemental strand, 22187094 - 22186944
Alignment:
Q  134 tgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaat 233  Q
    ||||||||||||||||||||||||| ||||||||  | ||||||||||| || |  || | ||| ||||||||| | ||||||| ||||| | | |||||    
T  22187094 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaagaacagtgcgctcttcccttccctttaccatccactcaat 22186995  T
Q  234 caatttgtctcttggctcttcaaatcccacaacttcagattcatccatgta 284  Q
    |||| | | ||||||| |||||||||||||||| |||| ||| || |||||    
T  22186994 caatctttttcttggcgcttcaaatcccacaacctcagcttcctcgatgta 22186944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 21930527 - 21930390
Alignment:
Q  134 tgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaat 233  Q
    ||||||||||||||||||||||||| ||||||||  | ||||||||||| || |  || || || ||||||||| | ||||||| ||||| | |||||||    
T  21930527 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaat 21930428  T
Q  234 caatttgtctcttggctcttcaaatcccacaacttcag 271  Q
    |||| | | ||||||  |||||||||||||||| ||||    
T  21930427 caatatttttcttggtgcttcaaatcccacaacctcag 21930390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 22034623 - 22034486
Alignment:
Q  134 tgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaat 233  Q
    ||||||||||||||||||||||||| ||||||||  | ||||||||||| || |  || || || ||||||||| | ||||||| ||||| | |||||||    
T  22034623 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaat 22034524  T
Q  234 caatttgtctcttggctcttcaaatcccacaacttcag 271  Q
    |||| | | ||||||  |||||||||||||||| ||||    
T  22034523 caatctttgtcttggtgcttcaaatcccacaacctcag 22034486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 22052839 - 22052702
Alignment:
Q  134 tgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaat 233  Q
    ||||||||||||||||||||||||| ||||||||  | ||||||||||| || |  || || || ||||||||| | ||||||| ||||| | |||||||    
T  22052839 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaat 22052740  T
Q  234 caatttgtctcttggctcttcaaatcccacaacttcag 271  Q
    |||| | | ||||||  |||||||||||||||| ||||    
T  22052739 caatctttttcttggtacttcaaatcccacaacctcag 22052702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 22179523 - 22179386
Alignment:
Q  134 tgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaat 233  Q
    ||||||||||||||||||||||||| ||||||||  | ||||||||||| || | | | || || |||||||||   ||||||| ||||| | |||||||    
T  22179523 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcccaccacgaataccacagtgcgctctttccttccctgtaccatccaatcaat 22179424  T
Q  234 caatttgtctcttggctcttcaaatcccacaacttcag 271  Q
    |||| | | ||||||| |||||||||||||||| ||||    
T  22179423 caatctttttcttggcgcttcaaatcccacaacctcag 22179386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 283
Target Start/End: Original strand, 22615559 - 22615768
Alignment:
Q  74 tgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcc 173  Q
    |||||| |||||||||||||||||||||| ||||||||||||    |   ||||  | | | |||||||| |||||||| ||||||||||| ||| | ||    
T  22615559 tgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccc 22615658  T
Q  174 tcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcagat 273  Q
    ||||||||| || |  |||||||| ||||||||| ||||||| | ||||||| |  | |||||| | ||||| | ||||| |||||||||||| |||  |    
T  22615659 tcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatctttctctagactcttgaaatcccacaacgtcaatt 22615758  T
Q  274 tcatccatgt 283  Q
    || |||||||    
T  22615759 tcctccatgt 22615768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 21937317 - 21937157
Alignment:
Q  76 tatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctc 175  Q
    |||| |||||||||||||||||||||| ||||||||||||    ||| || |  | | |||||||| ||||||| |||||||||||||||||  | ||||    
T  21937317 tatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctc 21937218  T
Q  176 ccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaa 236  Q
    ||||||| || |  || ||||| ||||||||||| ||||||| || || | ||||||||||    
T  21937217 ccattcctaccacagaaacaacagtgcgctctgcccttccctttatcatccaatcaatcaa 21937157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 271
Target Start/End: Complemental strand, 22115249 - 22115054
Alignment:
Q  76 tatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctc 175  Q
    |||| |||||||||||||||||||||| ||||||||||||    ||  |  |  | | |||||||||||||||| | |||||||||||||||  | ||||    
T  22115249 tatgattgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgccctc 22115150  T
Q  176 ccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcag 271  Q
    ||||||| || |  || | ||| ||||||||| | ||||||| ||||| | ||||||||||| | | ||||||  |||||||||||||||| ||||    
T  22115149 ccattcctaccacagaaagaacagtgcgctcttcccttccctataccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcag 22115054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 293
Target Start/End: Complemental strand, 22208177 - 22207967
Alignment:
Q  83 gagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattcc 182  Q
    |||||||||||||||||||| ||||||||||||    ||  |||| || | |||||||||||| |||||| ||||| ||||| ||  | |||||||| ||    
T  22208177 gagacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatccc 22208078  T
Q  183 aacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcagattcatccatg 282  Q
    ||| |  |||||||| ||| |||||  |||||| |||| |||||||| || |||||  || |||||  |||| ||||||||||||| || |||  | |||    
T  22208077 aaccaccgagacaacagtgagctcttttcttccatctatcaacaaattaaccaattcatcccttggggcttcgaatcccacaacttgagcttctccaatg 22207978  T
Q  283 tacaatggagc 293  Q
    || ||||||||    
T  22207977 taaaatggagc 22207967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 21945788 - 21945628
Alignment:
Q  76 tatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctc 175  Q
    |||| ||||||||| |||||||||||| ||||||||||||    ||  || |  | | ||||||||||||||||||||||||||||||||||  | ||||    
T  21945788 tatgattgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgccctc 21945689  T
Q  176 ccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaa 236  Q
    ||||||| || | ||| || || ||||||||  | ||||||| ||||| | ||||||||||    
T  21945688 ccattcctaccacggaaactacagtgcgctcctcccttccctttaccatccaatcaatcaa 21945628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 284
Target Start/End: Complemental strand, 22104878 - 22104679
Alignment:
Q  85 gacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaa 184  Q
    |||||||||||||| ||||||||||||||||    || ||| |  | | ||||||||||| ||||||||||||| ||||||||  | ||||||||||| |    
T  22104878 gacactgtgatccaaacatgacaatcaaagtgtccaattacatccttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattccta 22104779  T
Q  185 caatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcagattcatccatgta 284  Q
    | |  || || || ||||||||| |  |||||| ||||| | ||||||||||| | | ||||||  |||  ||||||||||| |||| ||| || |||||    
T  22104778 ccaccgaaactacagtgcgctcttccgttccctttaccatccaatcaatcaatctttttcttggtgctttgaatcccacaacatcagcttcctcaatgta 22104679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 22648518 - 22648619
Alignment:
Q  134 tgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgctctgctcttccctctaccaacaaatcaat 233  Q
    ||||||| |||||  |||| |||||||||||||| || |||||||| || || |  ||||  || |||||||||| |||||||||||||||| || ||||    
T  22648518 tgtcaaacacttttctggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctctgatcttccctctaccaaccaaccaat 22648617  T
Q  234 ca 235  Q
    ||    
T  22648618 ca 22648619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 185
Target Start/End: Complemental strand, 2797562 - 2797451
Alignment:
Q  74 tgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcc 173  Q
    |||||| |||||| |||||||| ||  || |||||||||| ||  |   |||||||||  |||| ||||||  |||||| |||||||||||||| || ||    
T  2797562 tgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaactagcttggcaagagtggtttttcctagacc 2797463  T
Q  174 tcccattccaac 185  Q
    ||||||||||||    
T  2797462 tcccattccaac 2797451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 2818709 - 2818650
Alignment:
Q  123 taccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattcc 182  Q
    |||||||||| |||||||||||  |||||| |||||||||||||| || || ||||||||    
T  2818709 taccttttggctgtcaaaaactagcttggcaagagtggtttttcctagaccccccattcc 2818650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 433
Target Start/End: Original strand, 22437256 - 22437290
Alignment:
Q  399 tgtatcttctatttcactcattcgggatttgatgt 433  Q
    |||||||| ||||||||||||||||||||||||||    
T  22437256 tgtatcttttatttcactcattcgggatttgatgt 22437290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 2769270 - 2769162
Alignment:
Q  74 tgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcc 173  Q
    |||||| |||||| |||||||| ||  || |||||||||||||   |  |||||||||| ||||| |||||   ||||| |||||||||||||| || ||    
T  2769270 tgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcataaactagtttggcaagagtggtttttcctagacc 2769171  T
Q  174 tcccattcc 182  Q
     ||||||||    
T  2769170 ccccattcc 2769162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 29610972 - 29611075
Alignment:
Q  189 ggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcagattcatccatgtacaat 288  Q
    |||||| |||||||||||||||||||||| ||||| | ||||||| ||| | ||||||||||||||||| ||  |||| |||| |||||||||||| |||    
T  29610972 ggagacgactgtgcgctctgctcttccct-taccagccaatcaattaatatttctcttggctcttcaaagcctgcaacgtcagcttcatccatgtaaaat 29611070  T
Q  289 ggagc 293  Q
    |||||    
T  29611071 ggagc 29611075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 27294654 - 27294606
Alignment:
Q  134 tgtcaaaaactttcttggctagagtggtttttcccagtcctcccattcc 182  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||    
T  27294654 tgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcc 27294606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 278
Target Start/End: Complemental strand, 34975537 - 34975344
Alignment:
Q  85 gacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaa 184  Q
    |||||||||||||||||| |||| |||||||     || |||| || | | |||||||| || || || ||||||||||||||  | |||||||| ||||    
T  34975537 gacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaa 34975438  T
Q  185 caatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttcagattcatc 278  Q
    | |  ||||  || ||||||||| ||||||||| ||||||  ||||||||||| | | | | || |||| ||| || |||||||||| ||||||    
T  34975437 ctacagagatgacagtgcgctctactcttccctttaccaaacaatcaatcaatatttttttgggttcttgaaagcctacaacttcagcttcatc 34975344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 275
Target Start/End: Complemental strand, 34980329 - 34980125
Alignment:
Q  73 ttgtatggttgagacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtc 172  Q
    ||||||| ||| |||||||||||||||||| |||| |||||||     || |||| || | | ||||||||||| || || |||||  |||||||  | |    
T  34980329 ttgtatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacttttttagcaagagttatttttccttgcc 34980230  T
Q  173 ctcccattccaacaatggagacaact--gtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaatcccacaacttca 270  Q
    ||||||||||||| |  ||||  ||   ||||||||| ||||||||| ||||||| ||||||||||| | | | | || |||| ||| || |||||||||    
T  34980229 ctcccattccaactacagagatgacacagtgcgctctactcttccctttaccaaccaatcaatcaatctatttttgggttcttgaaagcctacaacttca 34980130  T
Q  271 gattc 275  Q
    |||||    
T  34980129 gattc 34980125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 34989372 - 34989220
Alignment:
Q  85 gacactgtgatccatacatgacaatcaaagttcttaactaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaa 184  Q
    |||||||||||||||||| |||| |||||||     || |||| || | | |||||||| || || || ||||||||||||||  | |||||||| ||||    
T  34989372 gacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaa 34989273  T
Q  185 caatggagacaactgtgcgctctgctcttccctctaccaacaaatcaatcaat 237  Q
    | |  ||||  || ||||||||| ||||||||| ||||| | |||||||||||    
T  34989272 ctacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaat 34989220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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