View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11871_low_13 (Length: 443)

Name: NF11871_low_13
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11871_low_13
NF11871_low_13
[»] chr3 (7 HSPs)
chr3 (198-437)||(27487910-27488149)
chr3 (246-437)||(27476700-27476891)
chr3 (43-160)||(27487788-27487905)
chr3 (353-415)||(11592893-11592955)
chr3 (312-437)||(42966718-42966843)
chr3 (312-437)||(42975140-42975265)
chr3 (64-162)||(27476485-27476587)
[»] chr5 (2 HSPs)
chr5 (261-436)||(31999386-31999561)
chr5 (321-407)||(18300466-18300552)
[»] chr7 (1 HSPs)
chr7 (353-437)||(2866214-2866298)
[»] chr6 (2 HSPs)
chr6 (353-436)||(3803448-3803531)
chr6 (353-433)||(3814117-3814197)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 198 - 437
Target Start/End: Original strand, 27487910 - 27488149
Alignment:
Q  198 aattgataaatgaatttactataagtatacaaaagttattagaaactctaaaattgagctccttgaaaggtttgaccaaattgccaatttgctggtgcca 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27487910 aattgataaatgaatttactataagtatacaaaagttattaaaaactctaaaattgagctccttgaaaggtttgaccaaattgccaatttgctggtgcca 27488009  T
Q  298 cattgaaacttgtcatagttctaccatcacttgttgtaacttgaaatgagagggattgtccattaagataagagttgctttgccaattttggccccaatt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27488010 cattgaaacttgtcatagttctaccatcacttgttgtaacttgaaatgagagggattgtccattaagataagagttgctttgccaattttgaccccaatt 27488109  T
Q  398 tcttgacattggttgccatccagttcttgatcctttgatg 437  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  27488110 tcttgacattggttgccatccagttcttgaccctttgatg 27488149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 246 - 437
Target Start/End: Original strand, 27476700 - 27476891
Alignment:
Q  246 taaaattgagctccttgaaaggtttgaccaaattgccaatttgctggtgccacattgaaacttgtcatagttctaccatcacttgttgtaacttgaaatg 345  Q
    |||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27476700 taaaattgtgctccttggaaagtttgaccaaattgccaatttgctggagccacattgaaactggtcatagttctaccatcacttgttgtaacttgaaatg 27476799  T
Q  346 agagggattgtccattaagataagagttgctttgccaattttggccccaatttcttgacattggttgccatccagttcttgatcctttgatg 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  27476800 agagggattgtccattaagataagagttgctttgccaattttggccccaatttcttgacattggttgccaaccagttcttgaccctttgatg 27476891  T

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Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 43 - 160
Target Start/End: Original strand, 27487788 - 27487905
Alignment:
Q  43 tacataaaactcctatatatgaagtgaccagcgggtgctacataacaacctcagctactttacagaccaataagataaaacatggtctttcaaaatcaca 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27487788 tacataaaactcctatatatgaagtgaccagcgggtgctacataacaacctcagctactttacagaccaataagataaaacatggtctttcaaaatcaca 27487887  T
Q  143 gttacaacttttcaagaa 160  Q
    ||||||||||||||||||    
T  27487888 gttacaacttttcaagaa 27487905  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 11592955 - 11592893
Alignment:
Q  353 ttgtccattaagataagagttgctttgccaattttggccccaatttcttgacattggttgcca 415  Q
    |||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11592955 ttgtccatcaaggttagagttgctttgccaattttggccccaatttctagacattggttgcca 11592893  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 437
Target Start/End: Complemental strand, 42966843 - 42966718
Alignment:
Q  312 atagttctaccatcacttgttgtaacttgaaatgagagggattgtccattaagataagagttgctttgccaattttggccccaatttcttgacattggtt 411  Q
    |||||||||||||||||||| || ||||| |||||||||  ||| ||||| |||||    ||||||||||| || || ||||| || || ||||| | ||    
T  42966843 atagttctaccatcacttgtagtgacttggaatgagaggctttgaccattgagatagttattgctttgccagttctgcccccagttcctagacatagctt 42966744  T
Q  412 gccatccagttcttgatcctttgatg 437  Q
    ||||||||||  ||||||| ||||||    
T  42966743 gccatccagtctttgatcccttgatg 42966718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 437
Target Start/End: Complemental strand, 42975265 - 42975140
Alignment:
Q  312 atagttctaccatcacttgttgtaacttgaaatgagagggattgtccattaagataagagttgctttgccaattttggccccaatttcttgacattggtt 411  Q
    |||||||||||||||||||| || ||||| |||||||||  ||| ||||| |||||    ||||||||||| || || ||||| || || ||||| | ||    
T  42975265 atagttctaccatcacttgtagtgacttggaatgagaggctttgaccattgagatagttattgctttgccagttctgcccccagttcctagacatagctt 42975166  T
Q  412 gccatccagttcttgatcctttgatg 437  Q
    ||||||||||  ||||||| ||||||    
T  42975165 gccatccagtctttgatcccttgatg 42975140  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 27476485 - 27476587
Alignment:
Q  64 aagtgaccagcgggtgctacataacaacctcagctactttac-agaccaataagataaaaca----tggtctttcaaaatcacagttacaacttttcaag 158  Q
    ||||||||||||||||||| ||||| ||||||||||||||   |||||||||| |||||       |||||||| ||||||||| |||||||||||||||    
T  27476485 aagtgaccagcgggtgcta-ataaccacctcagctacttttgtagaccaataaaataaagggatgctggtcttttaaaatcacaattacaacttttcaag 27476583  T
Q  159 aata 162  Q
    ||||    
T  27476584 aata 27476587  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 436
Target Start/End: Original strand, 31999386 - 31999561
Alignment:
Q  261 tgaaaggtttgaccaaattgccaatttgctggtgccacattgaaacttgtcatagttctaccatcacttgttgtaacttgaaatgagagggattgtccat 360  Q
    |||||||| ||||| ||||||||||| ||||||||||| ||| | ||||||| ||||||||||||||  || || |||| ||| ||||||  ||||||||    
T  31999386 tgaaaggtctgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaagagaggctttgtccat 31999485  T
Q  361 taagataagagttgctttgccaattttggccccaatttcttgacattggttgccatccagttcttgatcctttgat 436  Q
    |||| || || ||||| ||||| ||||||||||||||||||||||| |||||||| | |||| | || ||||||||    
T  31999486 taaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctagttttggaccctttgat 31999561  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 407
Target Start/End: Original strand, 18300466 - 18300552
Alignment:
Q  321 ccatcacttgttgtaac-ttgaaatgagagggattgtccattaagataagagttgctttgccaattttggccccaatttcttgacatt 407  Q
    ||||||||||||||||| |||||| || |  | ||| |||||||| |||  |||||||||||||||||| ||||||||||| ||||||    
T  18300466 ccatcacttgttgtaaccttgaaa-gacaaagcttggccattaaggtaattgttgctttgccaattttgaccccaatttctagacatt 18300552  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 437
Target Start/End: Original strand, 2866214 - 2866298
Alignment:
Q  353 ttgtccattaagataagagttgctttgccaattttggccccaatttcttgacattggttgccatccagttcttgatcctttgatg 437  Q
    |||||||||||| |||||||| |||||||||||||| |||||||| |||||||| | |||||||| || |||||| |||||||||    
T  2866214 ttgtccattaaggtaagagttactttgccaattttgcccccaattccttgacatggcttgccatctagatcttgaacctttgatg 2866298  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 3803448 - 3803531
Alignment:
Q  353 ttgtccattaagataagagttgctttgccaattttggccccaatttcttgacattggttgccatccagttcttgatcctttgat 436  Q
    ||||||||| | |||||||||||| ||||||||||| |||||||| |||||||| | |||||||| ||| ||||| ||||||||    
T  3803448 ttgtccattcaaataagagttgctctgccaattttgtccccaattccttgacatggcttgccatctagtccttgaacctttgat 3803531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 3814117 - 3814197
Alignment:
Q  353 ttgtccattaagataagagttgctttgccaattttggccccaatttcttgacattggttgccatccagttcttgatccttt 433  Q
    ||||||||| | |||||||||||| ||||||||||| |||||||| |||||||| | |||||||| ||| ||||| |||||    
T  3814117 ttgtccattcaaataagagttgctctgccaattttgtccccaattccttgacatggcttgccatctagtccttgaaccttt 3814197  T

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