View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_16 (Length: 396)
Name: NF11871_low_16
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 33294000 - 33294116
Alignment:
| Q |
181 |
cctacagacaaaatcgtaggtagatttacctacaacagtttgaatatcaacgaacacttatcatctgtaggtctagttgcacccctaaggttggcccgga |
280 |
Q |
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| T |
33294000 |
cctagagacaaaatcgtaggtagatttacctacaacagtttgaatatcaacgaacatttatcgtctgtaggtctagttgcacccctaaggccggcccgga |
33294099 |
T |
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| Q |
281 |
acacaattcaatcccgc |
297 |
Q |
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| T |
33294100 |
acacaattcaatcccgc |
33294116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 33293833 - 33293949
Alignment:
| Q |
11 |
caaaggacttacggtaacattctgatcatacaaacttgctacacannnnnnnactcatgcaaaacaatatgcaagcatcttttagatcaattttgtggca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33293833 |
caaaggacttacggtaacattctgatcatacaaacttgctacacatttttttactcatgcaaaacaatatgcaagcatcttttagatcaattttgtggca |
33293932 |
T |
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| Q |
111 |
cttgtaatataaagaaa |
127 |
Q |
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| T |
33293933 |
cttgtaatataaagaaa |
33293949 |
T |
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