View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_17 (Length: 371)
Name: NF11871_low_17
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 85 - 350
Target Start/End: Complemental strand, 35933649 - 35933384
Alignment:
| Q |
85 |
gtaaaattggcaaataaagccttagatttcttaatgtggccatgcacttcacaaattaattcaatgtttcttgcaattcttataggagactgtcatgatt |
184 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35933649 |
gtaaaattggcaaataaagccttagatctcttaatgtggccatgcacttcacaaattaattcaatgtttcttgcaattcttataggagactgtcatgatt |
35933550 |
T |
|
| Q |
185 |
cttatggacataagcatagatgcgttactggagcaatatacaattatacaatgcaattaaaattagctaacgccgatgcttcatctgaattaaaatgtaa |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35933549 |
cttatggacataagcatagatgcgttactggagcaatatacaattatacaatgcaattaaaattagctaacgccgatgcttcatctgaattaaaatgtaa |
35933450 |
T |
|
| Q |
285 |
gcatttacgaattaaattcttaatttgcttgttttatttgaagataggtccttaaatttattactt |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35933449 |
gcatttacgaattaaattcttaatttgcttgttttatttgaagataggtccttaaatttattactt |
35933384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35933768 - 35933680
Alignment:
| Q |
1 |
ttagtctttgtttgctaaaaagttccttataacagataagctagtgaattgaatttgtagtgtttggtaaaactagatcaaagagtaaa |
89 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35933768 |
ttagtctttgtttgctaaaaagttcctgataacagataagctagtgaattgaatttgtagtgtttggtaaaactagatcaaagagtaaa |
35933680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 2103179 - 2103225
Alignment:
| Q |
26 |
cttataacagataagctagtgaattgaatttgtagtgtttggtaaaa |
72 |
Q |
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|
|||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
2103179 |
cttatagcagataagctagcttattgaatttgtagtgtttggtaaaa |
2103225 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 30070370 - 30070333
Alignment:
| Q |
35 |
gataagctagtgaattgaatttgtagtgtttggtaaaa |
72 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
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|
| T |
30070370 |
gataagctagctaattgaatttgtagtgtttggtaaaa |
30070333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 28870940 - 28870903
Alignment:
| Q |
35 |
gataagctagtgaattgaatttgtagtgtttggtaaaa |
72 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28870940 |
gataagctagtgaattgattttgtagtgtttggtaaaa |
28870903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 42747770 - 42747733
Alignment:
| Q |
35 |
gataagctagtgaattgaatttgtagtgtttggtaaaa |
72 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
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|
| T |
42747770 |
gataagctagttaattgaatttgtagtgtttggtaaaa |
42747733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 32348482 - 32348445
Alignment:
| Q |
35 |
gataagctagtgaattgaatttgtagtgtttggtaaaa |
72 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
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|
| T |
32348482 |
gataagctagttgattgaatttgtagtgtttggtaaaa |
32348445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 35544528 - 35544483
Alignment:
| Q |
27 |
ttataacagataagctagtgaattgaatttgtagtgtttggtaaaa |
72 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||| ||||| |
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|
| T |
35544528 |
ttataacagataagctagttaattgattttgtagtatttgttaaaa |
35544483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 31795354 - 31795382
Alignment:
| Q |
47 |
aattgaatttgtagtgtttggtaaaacta |
75 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
31795354 |
aattgaatttgtagtgtttggtaaaacta |
31795382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 38529621 - 38529664
Alignment:
| Q |
26 |
cttataacagataagctagtgaattgaatttgtagtgtttggta |
69 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||||||||||| |
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|
| T |
38529621 |
cttatatcagataagctggtggattgaatttgtagtgtttggta |
38529664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 29861558 - 29861522
Alignment:
| Q |
36 |
ataagctagtgaattgaatttgtagtgtttggtaaaa |
72 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
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|
| T |
29861558 |
ataagctagttgattgaatttgtagtgtttggtaaaa |
29861522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 12238211 - 12238257
Alignment:
| Q |
26 |
cttataacagataagctagtgaattgaatttgtagtgtttggtaaaa |
72 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
12238211 |
cttataacagataagctaattgattgaatttgtagtgttttgtaaaa |
12238257 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 36909666 - 36909629
Alignment:
| Q |
35 |
gataagctagtgaattgaatttgtagtgtttggtaaaa |
72 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
36909666 |
gataagctagtgaattgaatttgaagtgtttgataaaa |
36909629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 35682704 - 35682675
Alignment:
| Q |
48 |
attgaatttgtagtgtttggtaaaactaga |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
35682704 |
attgaatttgtagtgtttggtaaaactaga |
35682675 |
T |
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