View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11871_low_18 (Length: 370)
Name: NF11871_low_18
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 43099976 - 43100335
Alignment:
| Q |
1 |
gtctatttcatcttggtttcctgaatagtcttggttgtttgaaagctacaatttccaaatgaaatatatcaacaccaaaaatcttatatctaaaaatttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43099976 |
gtctatttcatcttggtttcctgaatagtcttggttgtttgaaagctacaatttccaaatgaaatatataaacaccaaaaatcttatatctaaaaatttt |
43100075 |
T |
|
| Q |
101 |
aatcattaattcaaattatagggtgatctcatatattgagacatttgatttcatatacctgatgtagagtcgagccagattgttgataattcctggtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43100076 |
aatcattaattcaaattatagggtgatctcatatattgagacatttgatttcatatacctgatgtagagtcgagccagattgttaataattcctggtttc |
43100175 |
T |
|
| Q |
201 |
atgtcagatgctaaggtttccacaggtttctagatccttcgtaaaaactaatagggatgaatgactttggaactagggcagtaccctggtgaagtatgac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43100176 |
atgtcagatgctaaggtttccacaggtttctagatccttcgtaaaaactaatagggatgaatgactttggaactagggcagtaccctggtgaagtatgac |
43100275 |
T |
|
| Q |
301 |
cctgagcattattcacttgtaatggtgc-----tagctagtattatgcgttattggttcc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
43100276 |
cctgagcattattcacttgtaatggtgctagcttagctagtattatgcgtcattggttcc |
43100335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 40870425 - 40870379
Alignment:
| Q |
136 |
ttgagacatttgatttcatatacctgatgtagagtcgagccagattg |
182 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
40870425 |
ttgagacatttgatttcatatacctgtggtagagtcaagccagattg |
40870379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 40870998 - 40870951
Alignment:
| Q |
36 |
tgtttgaaagctacaatttccaaatgaaat--atatcaacaccaaaaa |
81 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
40870998 |
tgtttgaaagctacaattcccaaatgaaattaatatcaacaccaaaaa |
40870951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University