View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_22 (Length: 338)
Name: NF11871_low_22
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 5 - 333
Target Start/End: Complemental strand, 53790507 - 53790179
Alignment:
| Q |
5 |
cagcaatagttggctcaaaacgtggaactactacatcaacaccatcaccaccaggaggctgcaattgtttgtatgtctccgtaccaagatcaagcgatat |
104 |
Q |
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| T |
53790507 |
cagcaatagttggctcaaaacgtggaactactaaattaacaccatcaccacgaggaggctgcaattgtttgtatgtctccgtaccaagatcaagcaagat |
53790408 |
T |
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| Q |
105 |
aatcatatattgctcaagaggagtatccctctggatcctagaataagtactacaactcaaatcatcttgaaaggcaatccagttaacagttccattcaaa |
204 |
Q |
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| T |
53790407 |
aatcatatattgctcaagagtagtatccctctgcatccaagaataagtactacaactcaaatcatcttgaaaggcaatccagttaacagttccattcaaa |
53790308 |
T |
|
| Q |
205 |
tacactccattattcacacgatcagagccaagagaaacatcgtgctcaaaacgaggaaaacttgaaatttcagtccaaatattatcacctatattgaaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53790307 |
tacactccattattcacacgatcagagccaagagaaacatcgtggtcaaaacgaggaaaacttgaaatttcagtccaaatattatcacctatattgaaaa |
53790208 |
T |
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| Q |
305 |
ttttcaccatgccagaacacattaacact |
333 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
53790207 |
ttttcaccttgccagaacacattaacact |
53790179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 19326137 - 19326206
Alignment:
| Q |
50 |
caccaccaggaggctgcaattgtttgtatgtctccgtaccaagatcaagcgatataatcatatattgctc |
119 |
Q |
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| T |
19326137 |
caccacgaggggtctgaaattgcttgtatgtctcagtaccaagatcaagggagataatcataaattgctc |
19326206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 22473323 - 22473365
Alignment:
| Q |
69 |
ttgtttgtatgtctccgtaccaagatcaagcgatataatcata |
111 |
Q |
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| T |
22473323 |
ttgtttgtatgtctctgtacctagatcaagagatataatcata |
22473365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 24254595 - 24254649
Alignment:
| Q |
67 |
aattgtttgtatgtctccgtaccaagatcaagcgatataatcatatattgctcaa |
121 |
Q |
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| T |
24254595 |
aattgcttgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaa |
24254649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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