View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_27 (Length: 277)
Name: NF11871_low_27
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_27 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6410199 - 6409923
Alignment:
| Q |
1 |
ctcagcactgattttcccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410199 |
ctcagcactgattttcccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttcc |
6410100 |
T |
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| Q |
101 |
ataaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccccaatccccttatccaaagcttttg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6410099 |
atgaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccccaatccccttatccaaagattttg |
6410000 |
T |
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| Q |
201 |
cagctgctttatactcttccagactaatcttgccatctttgtttgtgtcaaatttctcaaacacccatttcatttca |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6409999 |
cagctgctttatactcttccagactaatcttgccatctttgtttgtgtcaaatttctcaaacacccatttcatttca |
6409923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 6399557 - 6399836
Alignment:
| Q |
1 |
ctcagcactgattttcccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttcc |
100 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||| |
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| T |
6399557 |
ctcagcactaattttcccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttcc |
6399656 |
T |
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| Q |
101 |
ataaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccc---caatccccttatccaaagctt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || | |||||||||||||||||||| |
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| T |
6399657 |
ataaactctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagctt |
6399756 |
T |
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| Q |
198 |
ttgcagctgctttatactcttccagactaatcttgccatctttgtttgtgtcaaatttctcaaacacccatttcatttca |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
6399757 |
ttgcagctgctttatactcttccagactaatcttgccatctttgtttttgtcgaatttctcaaacacccatttcatttca |
6399836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6412945 - 6412666
Alignment:
| Q |
1 |
ctcagcactgattttcccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttcc |
100 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||| |
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| T |
6412945 |
ctcagcactaattttcccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttcc |
6412846 |
T |
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| Q |
101 |
ataaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccc---caatccccttatccaaagctt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || | |||||||||||||||||||| |
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| T |
6412845 |
ataaactctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagctt |
6412746 |
T |
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| Q |
198 |
ttgcagctgctttatactcttccagactaatcttgccatctttgtttgtgtcaaatttctcaaacacccatttcatttca |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
6412745 |
ttgcagctgctttatactcttccagactaatcttgccatctttgtttttgtcgaatttctcaaacacccatttcatttca |
6412666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 82 - 277
Target Start/End: Original strand, 6405257 - 6405452
Alignment:
| Q |
82 |
ttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccccaatc |
181 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||| |||||| | | |
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| T |
6405257 |
ttctccattgaacatttccataaactctctaaagtctatgaatccatctttgtcatagtccatggccttaaatgctttcactgcatcagtatcccctacc |
6405356 |
T |
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| Q |
182 |
cccttatccaaagcttttgcagctgctttatactcttccagactaatcttgccatctttgtttgtgtcaaatttctcaaacacccatttcatttca |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| || |||| |||||||||| |
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| T |
6405357 |
cccttatccaaagcttttgcagctgctttatactcttccaaactaatattgccatctttgtttgtgtcgaatttctcgaaaacccgtttcatttca |
6405452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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