View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_28 (Length: 270)
Name: NF11871_low_28
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 42875575 - 42875815
Alignment:
| Q |
20 |
cacaactcgaaaattgtgtttatttgaacgacgagcggtcaccttctgcttcggtttgcaaacaaatcccacggcatataaattttcgatacacgtcaaa |
119 |
Q |
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| T |
42875575 |
cacaactcgaaaattgtgtttatttgaacgacgagcggtcaccttctgcttcggtttgcaaacaaatcccacggcgtataaattttcgatacacgtcaaa |
42875674 |
T |
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| Q |
120 |
ggaggagaaggatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaata |
219 |
Q |
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| T |
42875675 |
ggaggagaaggatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaata |
42875774 |
T |
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| Q |
220 |
agccgttggaacaaccgcatatgctgctgcctttacctttg |
260 |
Q |
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| T |
42875775 |
agccgttggaacaaccgcatatgctgctgcctttacctttg |
42875815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 42751258 - 42751144
Alignment:
| Q |
130 |
gatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttgga |
229 |
Q |
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| T |
42751258 |
gatcaggtatatggatacactctttaacgagtggatcataaacataatagacggtagcacatgtgtcccgattcttagaacacaagaataaaccattgga |
42751159 |
T |
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| Q |
230 |
acaaccgcatatgct |
244 |
Q |
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| T |
42751158 |
acaaccacatatgct |
42751144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 1050207 - 1050295
Alignment:
| Q |
152 |
tttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcata |
240 |
Q |
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| T |
1050207 |
tttcataagtggatcgtaaatataatagtcgataccataggtgtatcgattcttacaacacaagaataaaccgttggaacaaccgcata |
1050295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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