View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11871_low_29 (Length: 268)

Name: NF11871_low_29
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11871_low_29
NF11871_low_29
[»] chr7 (3 HSPs)
chr7 (19-256)||(43076839-43077076)
chr7 (41-256)||(43091050-43091264)
chr7 (181-256)||(43092104-43092179)
[»] chr1 (1 HSPs)
chr1 (33-91)||(25247637-25247695)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 43076839 - 43077076
Alignment:
Q  19 agtagataccaattttatcgttgggattacgtgaagaaactgtgacttggaaatttgaggttaagaaatttggaactgtggcattgaaagcgtaaacagt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43076839 agtagataccaattttatcgttgggattacgtgaagaaactgtgacttggaaatttgaggttaagaaatttggaactgtggcgttgaaagcgtaaacagt 43076938  T
Q  119 gacatcttggagaatgaaagaaggtttagaaggttttaagacagcccaaatgattaggattgttactaggacaatgaagaggaagattatgattccccag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43076939 gacatcttggagaatgaaagaaggtttagaaggttttaagacagcccaaatgattaggattgttactaggacaatgaagaggaagattatgattccccag 43077038  T
Q  219 aagatttttctaaagcgtttgtgtttctttcctctgtg 256  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  43077039 aagatttttctgaagcgtttgtgtttctttcctttgtg 43077076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 41 - 256
Target Start/End: Original strand, 43091050 - 43091264
Alignment:
Q  41 gggattacgtgaagaaactgtgacttggaaatttgaggttaagaaatttggaactgtggcattgaaagcgtaaacagtgacatcttggagaatgaaagaa 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||     
T  43091050 gggattacgtgaagaaactgtgacttggaaatttgaggttaagaaattttgaactgtggcgttgaaagcgtaaacagtgacatcttggagaatgaaagac 43091149  T
Q  141 ggtttagaaggttttaagacagcccaaatgattaggattgttactaggacaatgaagaggaagattatgattccccagaagatttttctaaagcgtttgt 240  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  43091150 ggtttagaaggttttaagacatcccaaatgattaggattgttactaggacgatgaagaggaagattatgatt-cctagaagatttttctgaagcgtttgt 43091248  T
Q  241 gtttctttcctctgtg 256  Q
    |||| |||||| ||||    
T  43091249 gtttgtttcctttgtg 43091264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 43092104 - 43092179
Alignment:
Q  181 ttactaggacaatgaagaggaagattatgattccccagaagatttttctaaagcgtttgtgtttctttcctctgtg 256  Q
    |||||||||| |||||||||||||||||||||| |||||||| |||| | ||||||||||||||||||||| ||||    
T  43092104 ttactaggacgatgaagaggaagattatgattcgccagaagagttttatgaagcgtttgtgtttctttcctttgtg 43092179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 25247637 - 25247695
Alignment:
Q  33 ttatcgttgggattacgtgaagaaactgtgacttggaaatttgaggttaagaaatttgg 91  Q
    |||||||||||||| || || |||| ||| ||||| || ||||||||||||||||||||    
T  25247637 ttatcgttgggatttcgagacgaaagtgttacttgaaagtttgaggttaagaaatttgg 25247695  T

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