View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11871_low_3 (Length: 729)

Name: NF11871_low_3
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11871_low_3
NF11871_low_3
[»] chr4 (27 HSPs)
chr4 (258-729)||(35933789-35934256)
chr4 (1-225)||(26495120-26495345)
chr4 (1-225)||(8363282-8363507)
chr4 (9-225)||(36244668-36244885)
chr4 (9-225)||(56156933-56157150)
chr4 (14-225)||(52137424-52137636)
chr4 (120-225)||(56157508-56157614)
chr4 (120-216)||(36243527-36243623)
chr4 (120-225)||(26496321-26496427)
chr4 (14-155)||(44499890-44500031)
chr4 (120-227)||(20620135-20620243)
chr4 (120-225)||(20625516-20625622)
chr4 (47-227)||(35348793-35348974)
chr4 (44-189)||(36846496-36846640)
chr4 (47-111)||(46795968-46796032)
chr4 (128-227)||(52138815-52138914)
chr4 (47-111)||(307747-307811)
chr4 (31-131)||(669567-669667)
chr4 (47-106)||(41348354-41348413)
chr4 (51-156)||(26631162-26631267)
chr4 (47-111)||(29665516-29665580)
chr4 (47-139)||(39056510-39056602)
chr4 (47-108)||(47667291-47667352)
chr4 (47-111)||(38417663-38417727)
chr4 (47-111)||(38554039-38554103)
chr4 (48-107)||(96624-96683)
chr4 (49-106)||(44664271-44664328)
[»] scaffold0114 (1 HSPs)
scaffold0114 (1-227)||(38536-38763)
[»] chr2 (16 HSPs)
chr2 (1-225)||(28610020-28610245)
chr2 (40-226)||(4919824-4920011)
chr2 (40-185)||(45699568-45699713)
chr2 (124-225)||(4921074-4921176)
chr2 (47-210)||(19397544-19397707)
chr2 (120-225)||(28611264-28611370)
chr2 (112-216)||(8321247-8321351)
chr2 (47-131)||(1147842-1147926)
chr2 (122-212)||(19398814-19398904)
chr2 (147-201)||(45699523-45699577)
chr2 (14-129)||(9473958-9474073)
chr2 (44-129)||(2717717-2717803)
chr2 (94-134)||(28544941-28544981)
chr2 (55-110)||(3533576-3533631)
chr2 (48-135)||(35563062-35563149)
chr2 (44-110)||(10368324-10368390)
[»] chr1 (18 HSPs)
chr1 (1-225)||(14479408-14479633)
chr1 (1-225)||(28051501-28051725)
chr1 (14-224)||(51446749-51446960)
chr1 (47-210)||(40533543-40533706)
chr1 (120-225)||(51445588-51445694)
chr1 (120-226)||(14478263-14478370)
chr1 (120-225)||(28050319-28050425)
chr1 (51-208)||(12667218-12667375)
chr1 (47-107)||(24516448-24516508)
chr1 (47-107)||(40110594-40110654)
chr1 (47-118)||(26803158-26803229)
chr1 (47-225)||(48528835-48529015)
chr1 (128-210)||(40634711-40634793)
chr1 (57-126)||(14429849-14429918)
chr1 (49-106)||(28999954-29000011)
chr1 (55-107)||(33941431-33941483)
chr1 (57-111)||(50679773-50679827)
chr1 (58-111)||(9417050-9417103)
[»] chr3 (16 HSPs)
chr3 (1-226)||(13621851-13622077)
chr3 (1-225)||(49380847-49381072)
chr3 (14-189)||(14744098-14744273)
chr3 (120-218)||(13620926-13621024)
chr3 (127-225)||(49379699-49379798)
chr3 (47-115)||(7271533-7271601)
chr3 (44-112)||(8372555-8372623)
chr3 (47-111)||(48253043-48253107)
chr3 (47-138)||(10301757-10301848)
chr3 (51-111)||(53809439-53809499)
chr3 (73-119)||(7921611-7921657)
chr3 (73-111)||(43345429-43345467)
chr3 (47-108)||(47766893-47766954)
chr3 (47-111)||(10339931-10339995)
chr3 (44-111)||(32980391-32980458)
chr3 (55-106)||(45422115-45422166)
[»] chr5 (20 HSPs)
chr5 (1-225)||(11796567-11796791)
chr5 (120-227)||(23325908-23326016)
chr5 (47-138)||(9219262-9219353)
chr5 (120-225)||(23333979-23334085)
chr5 (47-212)||(10736877-10737042)
chr5 (47-132)||(10978218-10978303)
chr5 (44-111)||(8188139-8188206)
chr5 (44-115)||(1273195-1273266)
chr5 (45-107)||(5975870-5975932)
chr5 (120-225)||(11797545-11797651)
chr5 (52-156)||(13519540-13519649)
chr5 (120-189)||(13520794-13520863)
chr5 (47-153)||(4124828-4124934)
chr5 (55-111)||(18695597-18695653)
chr5 (44-115)||(22812325-22812397)
chr5 (73-111)||(15857586-15857624)
chr5 (76-111)||(5384317-5384352)
chr5 (57-111)||(21389095-21389149)
chr5 (74-111)||(224559-224596)
chr5 (47-148)||(35047495-35047595)
[»] chr7 (22 HSPs)
chr7 (1-227)||(41329363-41329590)
chr7 (14-227)||(32653459-32653673)
chr7 (43-189)||(35296753-35296899)
chr7 (120-225)||(41328217-41328323)
chr7 (120-225)||(39981315-39981421)
chr7 (50-156)||(43442705-43442811)
chr7 (44-208)||(666742-666906)
chr7 (47-139)||(10955930-10956022)
chr7 (47-131)||(26146646-26146730)
chr7 (44-111)||(28326329-28326396)
chr7 (47-112)||(17288184-17288249)
chr7 (44-107)||(29589206-29589269)
chr7 (44-111)||(41515106-41515173)
chr7 (64-155)||(44376644-44376735)
chr7 (64-155)||(44385511-44385602)
chr7 (44-108)||(25532257-25532321)
chr7 (47-118)||(45721708-45721779)
chr7 (49-107)||(18670448-18670506)
chr7 (176-224)||(32653735-32653784)
chr7 (14-106)||(3330810-3330902)
chr7 (48-132)||(29861588-29861672)
chr7 (73-115)||(43931834-43931876)
[»] scaffold0219 (2 HSPs)
scaffold0219 (44-225)||(6893-7074)
scaffold0219 (112-225)||(8194-8308)
[»] chr8 (19 HSPs)
chr8 (40-202)||(9853589-9853751)
chr8 (47-206)||(42793717-42793876)
chr8 (120-225)||(9854891-9854997)
chr8 (14-138)||(24191463-24191587)
chr8 (74-210)||(38697170-38697306)
chr8 (47-138)||(43203219-43203310)
chr8 (47-132)||(45395957-45396042)
chr8 (51-165)||(31844427-31844541)
chr8 (47-118)||(39516439-39516510)
chr8 (120-225)||(38697866-38697972)
chr8 (47-107)||(22621076-22621136)
chr8 (51-117)||(36757166-36757232)
chr8 (47-111)||(38095-38158)
chr8 (47-111)||(7770107-7770171)
chr8 (47-111)||(7777784-7777848)
chr8 (55-111)||(16362529-16362585)
chr8 (44-111)||(37274997-37275064)
chr8 (44-110)||(34616245-34616311)
chr8 (44-106)||(35945376-35945438)
[»] chr6 (5 HSPs)
chr6 (120-227)||(11722782-11722890)
chr6 (47-125)||(138145-138223)
chr6 (47-125)||(146166-146244)
chr6 (120-194)||(21777496-21777570)
chr6 (47-115)||(18242249-18242317)
[»] scaffold0098 (1 HSPs)
scaffold0098 (47-107)||(42288-42348)
[»] scaffold0084 (1 HSPs)
scaffold0084 (52-111)||(11816-11875)
[»] scaffold0045 (1 HSPs)
scaffold0045 (48-107)||(75859-75918)


Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 258 - 729
Target Start/End: Complemental strand, 35934256 - 35933789
Alignment:
Q  258 atcaatcaatcaatattttgtaaatttgaagaatgaaactttaggatattttcccacaaaatttctagaatggtttggaacacactcaatatgatcacgc 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  35934256 atcaatcaatcaatattttgtaaatttgaagaatgaaactttaggatattttcccacaaaatttctagaacggttcggaacacactcaatatgatcacgc 35934157  T
Q  358 tcttagttccgttgctgctatcacgggcgttgccaaatgttctggcttggggaaaagatggtcactatgcaatttgtaaaatttcacaggtaaccctaac 457  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35934156 tcttagttccgttgctgctatcactcgcgttgccaaatgttctggcttggggaaaagatggtcactatgcaatttgtaaaatttcacaggtaaccctaac 35934057  T
Q  458 cc-tattcactacactactctactcctcacctacttcatcatttgattctaaattcaaaccctaattttaggagtatcttagtgaagatgctctatttgc 556  Q
    || |||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35934056 ccctattcactacactactc-----ctcacctacttcatcatttgattctaaattcaaaccctaattttaggagtatcttagtgaagatgctctatttgc 35933962  T
Q  557 agtcaaacaattacttccagattctgctcaagctgatcttgcttcagtttgctcttggcctgatgagattcgccataattaccattatcgttggagtagt 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933961 agtcaaacaattacttccagattctgctcaagctgatcttgcttcagtttgctcttggcctgatgagattcgccataattaccattatcgttggagtagt 35933862  T
Q  657 cctttacattatattgatacaccagatttcaaatgtaactatcaatattgcagtaagtaattcaattcttttt 729  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933861 cctttacattatattgatacaccagatttcaaatgtaactatcaatattgcagtaagtaattcaattcttttt 35933789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26495345 - 26495120
Alignment:
Q  1 atgatattgctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 100  Q
    |||||| |||||||||||||||||||| | |||||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26495345 atgatagtgctggaaaaattaggtgccgatggctcactataggtataacagacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 26495246  T
Q  101 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||| ||||||||||    
T  26495245 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttataggagcaaaatgtaaactcataattatt 26495146  T
Q  201 taggggaccaaat-gtcaattaagcc 225  Q
    |||||||||||||  |||||||||||    
T  26495145 taggggaccaaatattcaattaagcc 26495120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8363282 - 8363507
Alignment:
Q  1 atgatattgctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 100  Q
    |||||| ||||||||||||||||| || | ||||||   ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  8363282 atgatagtgctggaaaaattaggtaccgatggctcattataggtataatggacatgcaatcaaacgacgaatatcatatcaaaaattttaaacattaaaa 8363381  T
Q  101 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatt 200  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||    
T  8363382 aactaacggaggggatcaatttgactaacggagcaaaaccaaagggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatt 8363481  T
Q  201 taggggaccaaatgt-caattaagcc 225  Q
    ||||||||||||||| ||||||||||    
T  8363482 taggggaccaaatgtccaattaagcc 8363507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 36244668 - 36244885
Alignment:
Q  9 gctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacg 108  Q
    ||||||||||||||||||| |||||| ||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36244668 gctggaaaaattaggtgccgacggctgactataggtataatggacatgcaatcaaacggctaatatcatatcaaacattttaaacattaaaaaactaacg 36244767  T
Q  109 gaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggac 208  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| | |||||||||||| ||||||||||| ||||||    
T  36244768 gaggggatcaatttgactgacggagcaaaatcaaggggacaaaaatgtgagttttacaatttatgggatcaaaatgtaaactcataattattttggggac 36244867  T
Q  209 caaatgt-caattaagcc 225  Q
    ||||| | ||||||||||    
T  36244868 caaatatccaattaagcc 36244885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 56157150 - 56156933
Alignment:
Q  9 gctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacg 108  Q
    |||||||||| |||||| | |||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  56157150 gctggaaaaactaggtgtcgacggctcactataggtataatggacatgcaaccaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacg 56157051  T
Q  109 gaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggac 208  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||    
T  56157050 gagggggtcaatttgattgacggagcaaaaccaaggagaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggac 56156951  T
Q  209 caaatgt-caattaagcc 225  Q
    ||||| | ||||||||||    
T  56156950 caaatatccaattaagcc 56156933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 52137636 - 52137424
Alignment:
Q  14 aaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 113  Q
    ||||||||| |||  |||| ||||  || ||||||||||||||||||||||||| ||| ||||||||||||| |||| ||||| ||||||||||||||      
T  52137636 aaaaattagctgctgacggttcactataagtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgaaaaactaacggagat 52137537  T
Q  114 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaat 213  Q
    ||| |||||||| ||||||| ||||||||| ||||||||||||  |||||||||||| ||| |||||||||||||| ||||||||||||| |||||||||    
T  52137536 gatgaatttgaccgacggagtaaaaccaagaggaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaat 52137437  T
Q  214 gt-caattaagcc 225  Q
     | ||||||||||    
T  52137436 atccaattaagcc 52137424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 56157508 - 56157614
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| | |||    
T  56157508 tttgactaatggagcaaaaccaaagggaccaaaatgtgagttttacaatttatgaaaccaaaatgtaaacgcataattatttagaggaccaaatatccaa 56157607  T
Q  219 ttaagcc 225  Q
    |||||||    
T  56157608 ttaagcc 56157614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 36243623 - 36243527
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgtc 216  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||||||||||||||||||    
T  36243623 tttgactaacagagcaaaactaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtc 36243527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 26496321 - 26496427
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    |||||||||||||||||| | ||| |||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |||| ||||||||||| |||    
T  26496321 tttgactgacggagcaaacctaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacacataattagttagaggaccaaatgtccaa 26496420  T
Q  219 ttaagcc 225  Q
    |||||||    
T  26496421 ttaagcc 26496427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 44499890 - 44500031
Alignment:
Q  14 aaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 113  Q
    |||||||||||||  |||| ||||  ||| || ||||||||||||||||||||| ||| |||| |||||||| | || ||||||| |||||||||||| |    
T  44499890 aaaaattaggtgctgacggttcactatagatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatatagacattaacaaactaacggagtg 44499989  T
Q  114 gatcaatttgactgacggagcaaaaccaaggggaccaaaatg 155  Q
    ||||||||||||| |||||||||||   | ||||||||||||    
T  44499990 gatcaatttgactaacggagcaaaagttaagggaccaaaatg 44500031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 20620243 - 20620135
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    ||||||||||||| |||||||||| ||||  || |||||||||||||| || ||| |||||||||||||| ||||||||||||| |||||||| || |||    
T  20620243 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaaggtccaa 20620144  T
Q  219 ttaagccaa 227  Q
    |||||||||    
T  20620143 ttaagccaa 20620135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 20625516 - 20625622
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    ||||||||||||| |||||||||| ||||  || ||| |||||||||| || ||| |||||||||||||| ||||||||||||| ||||||||||| |||    
T  20625516 tttgactgacggaccaaaaccaagaggactcaactgtaagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 20625615  T
Q  219 ttaagcc 225  Q
    |||||||    
T  20625616 ttaagcc 20625622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 35348974 - 35348793
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 146  Q
    ||||||||  |||||||| || ||| |||| ||||||||||||| |||||||||| |||||||||||||  || |||||||||| |||||||| |  |||    
T  35348974 aatggacactcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagctaacggaggggactaaattgactgacgaagcaaaacaagaggg 35348875  T
Q  147 accaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caattaagccaa 227  Q
    || |||| ||   |||||||| || ||| ||||||||| ||||    ||||| ||| ||||||||| || ||||||||||||    
T  35348874 actaaaacgttgattttacaagttatgggaccaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaagccaa 35348793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 36846496 - 36846640
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaag 143  Q
    ||||||||||||||||||||| || ||| |||| |||||||| |||| ||||| ||||||||||||| |||| ||| |||||  |||||||||||| |      
T  36846496 tataatggacatgcaatcaaatggttaaaatcaaatcaaaaaatttagacatt-aaaaactaacggaagggaccaaattgacgaacggagcaaaacaaga 36846594  T
Q  144 gggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaac 189  Q
    |||||||||||||   |||||| | || ||| ||||||||| ||||    
T  36846595 gggaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 36846640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 46795968 - 46796032
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||||||||||| || ||| ||||||||||||| |||| ||||||||||||||||||||    
T  46795968 aatggacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 46796032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 52138815 - 52138914
Alignment:
Q  128 acggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgtc-aattaagcca 226  Q
    |||||||||||||||| ||||||||||| | || ||||||||| ||  | |||||| ||||||||||||||||||| ||| |||||||| ||||||||||    
T  52138815 acggagcaaaaccaagaggaccaaaatggg-gtcttacaatttatgtgatcaaaatataaacgcataattatttagaggatcaaatgtcgaattaagcca 52138913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 307747 - 307811
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||||||||| | || ||| ||||||||||||| ||||||||||||||||| |||||||    
T  307747 aatggacatgcaatcatatggttaaaatcatatcaaaaaatttaaacattaaaaaaccaacggag 307811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 669567 - 669667
Alignment:
Q  31 ggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacg 130  Q
    |||||||||||| |||||||||||||||||||||||| ||| ||| ||| || |  || | ||||||||| | ||| |||| ||| ||||||||||||||    
T  669567 ggctcaccgtagatataatggacatgcaatcaaacggttaaaatcgtataaatatattcagacattaaaacattaatggagtggaccaatttgactgacg 669666  T
Q  131 g 131  Q
    |    
T  669667 g 669667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 41348413 - 41348354
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaa 106  Q
    |||||||||||||||||| |  ||| |||||||||||||||||| |||||||||||||||    
T  41348413 aatggacatgcaatcaaatgattaaaatcatatcaaaaattttatacattaaaaaactaa 41348354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 26631162 - 26631267
Alignment:
Q  51 gacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggacca 150  Q
    |||||||||||||  || ||| |||| |||||||| |||| ||||||||  || ||||||||||| ||| |||||| |||||||||||| |  || ||||    
T  26631162 gacatgcaatcaagtggttaaaatcaaatcaaaaaatttagacattaaaggacaaacggaggggaccaaattgactaacggagcaaaacaagaggaacca 26631261  T
Q  151 aaatgt 156  Q
    ||||||    
T  26631262 aaatgt 26631267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 29665516 - 29665580
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||||||||||| || ||| |||| |||||||| |||| ||||||||||| ||||||||    
T  29665516 aatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaattaacggag 29665580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 39056602 - 39056510
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaac 139  Q
    ||||||||  |||||||| || ||| |||| ||||||||||||| |||||||||| ||||||| ||| |  || |||||| ||||||||||||    
T  39056602 aatggacactcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagctaacggtgggaactaaattgactaacggagcaaaac 39056510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 47667352 - 47667291
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacg 108  Q
    |||||||||||||||||| || ||| |||| || ||||| |||| |||||||||||||||||    
T  47667352 aatggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacg 47667291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 38417727 - 38417663
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||| ||||||||||||| | | ||||||| ||||| | |||||||||||| ||||||||||    
T  38417727 aatggacctgcaatcaaacggttgaaatcatattaaaaaatctaaacattaaaatactaacggag 38417663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 38554103 - 38554039
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||| ||| |||||| || ||| ||||||||||||| |||| ||||||||||||||| ||||    
T  38554103 aatggacgtgcgatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaatggag 38554039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 96624 - 96683
Alignment:
Q  48 atggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 107  Q
    |||||| ||||||||||||| || |||||||| |||||| ||| |||| |||||||||||    
T  96624 atggacctgcaatcaaacggttattatcatattaaaaatattagacatcaaaaaactaac 96683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 44664271 - 44664328
Alignment:
Q  49 tggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaa 106  Q
    ||||| |||||||||||| |||  ||||||| |||||| ||| |||||||||||||||    
T  44664271 tggacctgcaatcaaacgactataatcatattaaaaatattatacattaaaaaactaa 44664328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38763 - 38536
Alignment:
Q  1 atgatattgctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 100  Q
    |||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  38763 atgatagtgctggaaaaattaggtgccgacggctcactataggtataatggacatgcaatcaaacggctaatatcatataaaaaattttaatcattaaaa 38664  T
Q  101 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatt 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||||    
T  38663 aactaacggaggggatcaatttgactgacggaggaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatggaaactcataattatt 38564  T
Q  201 taggggaccaaatgt-caattaagccaa 227  Q
    ||||||||||||||| ||||||||||||    
T  38563 taggggaccaaatgtccaattaagccaa 38536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 3e-93; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28610245 - 28610020
Alignment:
Q  1 atgatattgctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 100  Q
    |||||| |||||||||||||||||||| |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610245 atgatagtgctggaaaaattaggtgccgacggctcactataggtataatgaacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 28610146  T
Q  101 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatt 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||    
T  28610145 aactaacggatgggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatt 28610046  T
Q  201 taggggaccaaatgt-caattaagcc 225  Q
    |||| |||||||||| ||||||||||    
T  28610045 taggtgaccaaatgtccaattaagcc 28610020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 40 - 226
Target Start/End: Complemental strand, 4920011 - 4919824
Alignment:
Q  40 taggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaac 139  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||| |||| |  |||||||||||| ||||||||||||||||||||||||||||||||    
T  4920011 taggtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagatgttaaaaaactaatggaggggatcaatttgactgacggagcaaaac 4919912  T
Q  140 caaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caattaagcca 226  Q
    ||||||||||||||||||  ||||| ||||| ||| |||||| |||||| |||||||||||||| ||||||||||| |||||||||||    
T  4919911 caaggggaccaaaatgtggattttataatttatgggaccaaattgtaaatgcataattatttagaggaccaaatgtccaattaagcca 4919824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 45699713 - 45699568
Alignment:
Q  40 taggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaac 139  Q
    ||||||| |||||||||||||||||| | ||| ||||||||||||| |||| | ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  45699713 taggtatgatggacatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaatggagggggtcaatttgactgacggagcaaaac 45699614  T
Q  140 caaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgt 185  Q
    ||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  45699613 caaagggactaaaatgtgagttttacaatttatggaaccaaaatgt 45699568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 4921074 - 4921176
Alignment:
Q  124 actgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caattaa 222  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||| |||||||    
T  4921074 actgacagagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggactaaaatgtaaacgcataattatttagaggaccaaatgtccaattaa 4921173  T
Q  223 gcc 225  Q
    |||    
T  4921174 gcc 4921176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 19397707 - 19397544
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 146  Q
    ||||||||||||||| || || ||| || ||||||||| ||||| ||||||||||| ||||||| |||| |  | ||||| |||||||||||| |  |||    
T  19397707 aatggacatgcaatccaatggttaaaattatatcaaaagttttagacattaaaaaaataacggaagggacctttatgactaacggagcaaaacgagaggg 19397608  T
Q  147 accaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggacca 210  Q
    |||||||||| ||||||| ||||| ||| ||||||||||||||   ||||||||||||||||||    
T  19397607 accaaaatgttagttttaaaatttatgggaccaaaatgtaaactggtaattatttaggggacca 19397544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 28611264 - 28611370
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    |||||||||||||||||||||||  |||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| | |||    
T  28611264 tttgactgacggagcaaaaccaaaaggaccaaaatatgaattttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatatccaa 28611363  T
Q  219 ttaagcc 225  Q
    |||||||    
T  28611364 ttaagcc 28611370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 8321247 - 8321351
Alignment:
Q  112 gggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaa 211  Q
    |||||||||||||| ||||||||||||  || ||||| |||||||  |||||| ||||| ||| |||||||||||||||||||||||||||| ||| |||    
T  8321247 gggatcaatttgaccgacggagcaaaattaaagggactaaaatgttggttttaaaatttatgggaccaaaatgtaaacgcataattatttagaggatcaa 8321346  T
Q  212 atgtc 216  Q
    |||||    
T  8321347 atgtc 8321351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 1147926 - 1147842
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgg 131  Q
    |||||||||||||||  | || ||| ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||    
T  1147926 aatggacatgcaatcggatggttaaaatcatatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgactaacgg 1147842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 19398814 - 19398904
Alignment:
Q  122 tgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaa 212  Q
    ||||| |||||||||||| |  |||||||||||||  |||||||||||| ||| ||||||||||||||   ||||||||||||| ||||||    
T  19398814 tgactaacggagcaaaacaagagggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaaccggtaattatttagggaaccaaa 19398904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 45699577 - 45699523
Alignment:
Q  147 accaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattattt 201  Q
    |||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||    
T  45699577 accaaaatgtgaattttacaatttatgggaccaaaatgtaaacacataattattt 45699523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 9473958 - 9474073
Alignment:
Q  14 aaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 113  Q
    |||||||||||||  | || ||||||||   | ||||||||||||||| ||  | ||| || ||||||||||| ||||||||||||||  ||| ||||||    
T  9473958 aaaaattaggtgcagatggttcaccgtaaacacaatggacatgcaatcgaatagttaaaattatatcaaaaatattaaacattaaaaatttaatggaggg 9474057  T
Q  114 gatcaatttgactgac 129  Q
    || || ||||||||||    
T  9474058 gaccactttgactgac 9474073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 2717717 - 2717803
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaa-ctaacggaggggatcaatttgactgac 129  Q
    |||||||||| |||||||||| || ||| |||| |||| |||| ||||||||||||||| ||||||| | |||| || |||||||||    
T  2717717 tataatggacgtgcaatcaaatggttaaaatcagatcagaaatattaaacattaaaaaagctaacggtgaggattaagttgactgac 2717803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 28544941 - 28544981
Alignment:
Q  94 attaaaaaactaacggaggggatcaatttgactgacggagc 134  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  28544941 attaaaaaactaacgtagaggatcaatttgactgacggagc 28544981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 3533576 - 3533631
Alignment:
Q  55 tgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacgga 110  Q
    ||||||||||||| | | |||||||||||||  ||||||||||||| |||||||||    
T  3533576 tgcaatcaaacggttgaaatcatatcaaaaaacttaaacattaaaatactaacgga 3533631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 35563149 - 35563062
Alignment:
Q  48 atggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagca 135  Q
    |||||| ||||||| || |||| | |||| ||| ||||| ||| |||| ||||||||||||||  ||| |||||||||| ||||||||    
T  35563149 atggacctgcaatctaatggctgaaatcacatctaaaatattagacataaaaaaactaacggaatggaacaatttgacttacggagca 35563062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 10368324 - 10368390
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacgga 110  Q
    |||||||||||||||||| |||||   | | |||||||||||| ||||| |||||||||| ||||||    
T  10368324 tataatggacatgcaatcgaacggtcgaaaacatatcaaaaatattaaatattaaaaaacaaacgga 10368390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 7e-91; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 14479408 - 14479633
Alignment:
Q  1 atgatattgctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 100  Q
    |||||| | |||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14479408 atgatagtcctggaaaaattaggtgctgacggctcactataggtataatggacatgcaatcaaacggctaatataatatcaaaaattttaatcattaaaa 14479507  T
Q  101 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatt 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  14479508 aactaacggaggggatcaatttgactgatggagcaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatt 14479607  T
Q  201 taggggaccaaatgt-caattaagcc 225  Q
    ||||||||||||||| ||||||||||    
T  14479608 taggggaccaaatgtccaattaagcc 14479633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28051501 - 28051725
Alignment:
Q  1 atgatattgctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 100  Q
    |||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28051501 atgatagtgctggaaaaattaggtgccgacggctcactataggtataatggacatgcaatcaaacagctaatatcatatcaaaaattttaaacattaaaa 28051600  T
Q  101 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatt 200  Q
    || |||||||  | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  28051601 aattaacgga-tgaatcaatttgactaacggagcaaaatcaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatt 28051699  T
Q  201 taggggaccaaatgt-caattaagcc 225  Q
    ||||| | ||||| | ||||||||||    
T  28051700 tagggaatcaaatatccaattaagcc 28051725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 51446749 - 51446960
Alignment:
Q  14 aaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 113  Q
    ||||||||| |||  |||| ||||  |||||||||||||||||||||||||| | ||| ||||||||||||| |||| | ||||||||||||||||||||    
T  51446749 aaaaattagatgctgacggttcacaataggtataatggacatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaacggaggg 51446848  T
Q  114 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||  ||||||||||||| |||||||||||||| |||||||||    
T  51446849 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgggttttacaatttatgtgaccaaaatgtaaatgcataattatttagaggaccaaat 51446948  T
Q  214 gt-caattaagc 224  Q
    || |||||||||    
T  51446949 gtccaattaagc 51446960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 40533543 - 40533706
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 146  Q
    ||||||||||||||| || || ||| |||||||||||| ||||| ||||||||||| |||||||||||| |  ||||||| |||||||||| | |  |||    
T  40533543 aatggacatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacggaggggacctttttgactaacggagcaaagcgagaggg 40533642  T
Q  147 accaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggacca 210  Q
    ||||||||||  |||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  40533643 accaaaatgttggttttacaatttatggaaccaaaatgtaaactgataattatttaggggacca 40533706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 51445694 - 51445588
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    |||||||||| || |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||    
T  51445694 tttgactgacagatcaaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaa 51445595  T
Q  219 ttaagcc 225  Q
    |||||||    
T  51445594 ttaagcc 51445588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 14478370 - 14478263
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| ||| | |||||||||||| ||||||||||||| ||||||||||| |||    
T  14478370 tttgactgacggagcaaaacccagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggaccaaatgtccaa 14478271  T
Q  219 ttaagcca 226  Q
    ||||||||    
T  14478270 ttaagcca 14478263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 28050425 - 28050319
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgtc-aa 218  Q
    ||||||| ||||||||||| ||||||||||||||||||  ||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||| ||    
T  28050425 tttgactaacggagcaaaatcaaggggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttaagggaccaaatgtctaa 28050326  T
Q  219 ttaagcc 225  Q
    |||||||    
T  28050325 ttaagcc 28050319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 12667218 - 12667375
Alignment:
Q  51 gacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggacca 150  Q
    |||||||||||||| |  ||| |||| |||||||| |||  |||||||||||||||||||||||| ||| |||||| |||||||||||| |  ||||||     
T  12667218 gacatgcaatcaaatgattaaaatcaaatcaaaaaatttcgacattaaaaaactaacggaggggaccaagttgactaacggagcaaaacaagagggaccg 12667317  T
Q  151 aaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggac 208  Q
    |||||| | |||||| | || | | ||||||||| ||||  |||||||||||| ||||    
T  12667318 aaatgttaattttacgaattctaggaccaaaatgaaaactgataattatttagaggac 12667375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 24516508 - 24516448
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 107  Q
    |||||||||||||||||| || ||| |||||||||| ||||||| ||||||||||||||||    
T  24516508 aatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaaaactaac 24516448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 40110594 - 40110654
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 107  Q
    |||||||||||||||||| || ||| |||||||||| ||||||| ||||||||||||||||    
T  40110594 aatggacatgcaatcaaatggttaaaatcatatcaataattttatacattaaaaaactaac 40110654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 26803158 - 26803229
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatca 118  Q
    |||||||||||||||||| || ||| |||||||||| ||||||| ||||||||| |||||| ||| ||||||    
T  26803158 aatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaatactaacagagaggatca 26803229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 48528835 - 48529015
Alignment:
Q  47 aatggacatgcaatcaaacggct-aatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggg 145  Q
    ||||||||||||||| || || | || |||| ||||||| ||||| | ||||||||||||||||| |||| ||| |||||| |||||| ||||  |  ||    
T  48528835 aatggacatgcaatctaatggtttaaaatcaaatcaaaagttttagatattaaaaaactaacggatgggaccaaattgactaacggagaaaaataagagg 48528934  T
Q  146 gaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caattaagcc 225  Q
    ||| |||||||   |||||| | || ||| ||||||||||||||    ||||| || |||||||||| || ||||||||||    
T  48528935 gactaaaatgttgattttacgagttatgggaccaaaatgtaaacaacaaattacttgggggaccaaaagtccaattaagcc 48529015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 40634711 - 40634793
Alignment:
Q  128 acggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaac-gcataattatttaggggacca 210  Q
    ||||||||||| ||||||||| |||||||||||||||  |||| | | | |||||||||||| ||| |||||||||||||||||    
T  40634711 acggagcaaaatcaaggggacgaaaatgtgagttttatgatttatcggatcaaaatgtaaactgca-aattatttaggggacca 40634793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 14429918 - 14429849
Alignment:
Q  57 caatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgact 126  Q
    ||||||||||| ||| |||||||||| ||| ||| ||||||||||| |||| |||  |||||||||||||    
T  14429918 caatcaaacggttaaaatcatatcaagaatattagacattaaaaaaataacagagatgatcaatttgact 14429849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 29000011 - 28999954
Alignment:
Q  49 tggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaa 106  Q
    ||||| ||||||||||||||||  ||||||| |||||| ||| |||||||||||||||    
T  29000011 tggacctgcaatcaaacggctataatcatattaaaaatattatacattaaaaaactaa 28999954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 33941483 - 33941431
Alignment:
Q  55 tgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 107  Q
    ||||||||||||| ||| ||||||| |||||| ||| ||||||||||||||||    
T  33941483 tgcaatcaaacggttaaaatcatattaaaaatgttagacattaaaaaactaac 33941431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 50679773 - 50679827
Alignment:
Q  57 caatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||||||| | | | ||||||||||| |||| ||||||||||||||||||||    
T  50679773 caatcaaacggttgaaaacatatcaaaaaatttagacattaaaaaactaacggag 50679827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 9417050 - 9417103
Alignment:
Q  58 aatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||| ||  ||||||| |||||| ||| ||||||||||||||||||||    
T  9417050 aatcaaacggttataatcatattaaaaatattatacattaaaaaactaacggag 9417103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 5e-89; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 13621851 - 13622077
Alignment:
Q  1 atgatattgctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 100  Q
    |||||| |||||||||||||||||||| | |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13621851 atgatagtgctggaaaaattaggtgccgatggctcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaatattaaaa 13621950  T
Q  101 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatt 200  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||    
T  13621951 aactaactgaggggatcaatttgactgacgaagcaaaatcaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatt 13622050  T
Q  201 taggggaccaaatgt-caattaagcca 226  Q
    ||||||||||||||| |||||||||||    
T  13622051 taggggaccaaatgtccaattaagcca 13622077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 49380847 - 49381072
Alignment:
Q  1 atgatattgctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 100  Q
    |||||| |||||||||||||||||||| |  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49380847 atgatagtgctggaaaaattaggtgccgatagctcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 49380946  T
Q  101 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | | |||||||||||||| ||||||||||    
T  49380947 aactaacggaggggatcaatttgactgacggagcaaaaccaagggtaccaaaatatgagttttacaatttataggaccaaaatgtaaactcataattatt 49381046  T
Q  201 taggggaccaaatgt-caattaagcc 225  Q
    ||||||||||||| | ||||||||||    
T  49381047 taggggaccaaatatccaattaagcc 49381072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 14744273 - 14744098
Alignment:
Q  14 aaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 113  Q
    |||||||||||||  | || ||||  || ||||||||||||||||||||| ||| ||| ||||||||||||| |||| ||||||||||| ||||||||      
T  14744273 aaaaattaggtgctgatggttcactatatgtataatggacatgcaatcaatcggttaaaatcatatcaaaaaatttagacattaaaaaattaacggagat 14744174  T
Q  114 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaac 189  Q
    ||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||| ||  ||||||||||||||    
T  14744173 gatcaatttgactaacggagcaaaaccaatgaaaccaaaatgtgagttttacaatttatgagaccaaaatgtaaac 14744098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 13621024 - 13620926
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgtcaa 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||||||    
T  13621024 tttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttagaggaccaaatgtcaa 13620926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 49379798 - 49379699
Alignment:
Q  127 gacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caattaagcc 225  Q
    ||||||||||||||||| | || ||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  49379798 gacggagcaaaaccaagagaactaaaatgtgagttttacaatttatgggaccaaaatataaacgcataattatttagaggaccaaatgtccaattaagcc 49379699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 7271533 - 7271601
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagggga 115  Q
    |||||||||||||||||| || ||| || | |||||||| |||| ||||||||||||||||||||||||    
T  7271533 aatggacatgcaatcaaatggttaaaattaaatcaaaaagtttagacattaaaaaactaacggagggga 7271601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 8372555 - 8372623
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagg 112  Q
    |||||||||| ||||||| || || | | |||||||||||||| |||||||||||||||||||||||||    
T  8372555 tataatggacctgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacggagg 8372623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 48253107 - 48253043
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||||||||||| || ||| |||| |||||||| |||| ||||||||||||||||||||    
T  48253107 aatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaactaacggag 48253043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 10301757 - 10301848
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaa 138  Q
    ||||||||| |||||||| || ||| |||| |||||||| |||| |||||||||||||||| ||||  | ||| |||||| |||||||||||    
T  10301757 aatggacattcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaaaactaacagaggacaccaaattgactaacggagcaaaa 10301848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 53809439 - 53809499
Alignment:
Q  51 gacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||||||| || ||| || |||||||||| |||| ||||||||||||||||||||    
T  53809439 gacatgcaatcaaatggttaaaattatatcaaaaaatttagacattaaaaaactaacggag 53809499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 7921611 - 7921657
Alignment:
Q  73 atcatatcaaaaattttaaacattaaaaaactaacggaggggatcaa 119  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||||    
T  7921611 atcatatcaaaaatattagacattaaaaaactaacggagaggatcaa 7921657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 43345467 - 43345429
Alignment:
Q  73 atcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43345467 atcatatcaaaaatattaaacattaaaaaactaacggag 43345429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 47766893 - 47766954
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacg 108  Q
    |||||||||||||||||| || ||| |||| || ||||| |||| |||||||||||||||||    
T  47766893 aatggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacg 47766954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 10339931 - 10339995
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||||| |||||||| || | | |||| |||||||| |||| ||||||||||||||||||||    
T  10339931 aatggacattcaatcaaatggttcaaatcaaatcaaaaaatttagacattaaaaaactaacggag 10339995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 32980391 - 32980458
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||| ||||||| || || | | |||||||||||||| ||| | ||||||||||||||||||    
T  32980391 tataatggacctgcaatcgaatggttgaaatcatatcaaaaatgttagaaattaaaaaactaacggag 32980458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 45422115 - 45422166
Alignment:
Q  55 tgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaa 106  Q
    |||||||||| || |||||||||||||| ||| ||| |||||||||||||||    
T  45422115 tgcaatcaaatggttaatatcatatcaagaatattagacattaaaaaactaa 45422166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 1e-83; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11796791 - 11796567
Alignment:
Q  1 atgatattgctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 100  Q
    |||||| ||||||||||||||| |||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11796791 atgatagtgctggaaaaattagatgccgacggctcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaagttttaaacattaaaa 11796692  T
Q  101 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatt 200  Q
    ||||| |||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||||||    
T  11796691 aactagcggatgggatcaatttgactgagggagcaaaaccaa-gggaccaaaatatgagttttacaatttatgggaccaaaatgtaaactcataattatt 11796593  T
Q  201 taggggaccaaatgt-caattaagcc 225  Q
    ||||||||||||||| ||||||||||    
T  11796592 taggggaccaaatgtccaattaagcc 11796567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 23326016 - 23325908
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    ||||||||||||| |||||||||| ||||  || |||||||||||||| || ||| |||||||||||||| ||||||||||||| ||||||||||| |||    
T  23326016 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 23325917  T
Q  219 ttaagccaa 227  Q
    |||||||||    
T  23325916 ttaagccaa 23325908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 9219353 - 9219262
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaa 138  Q
    |||| |||||||||||||||| ||| |||| || |||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||    
T  9219353 aatgaacatgcaatcaaacggttaaaatcaaataaaaaattttagacattaaaaaactaacggaggggatcaaattgactaatggagcaaaa 9219262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 23333979 - 23334085
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    ||||||||||||| |||||||||| ||||  || ||| |||||||||| || ||| |||||||||||||| ||||||||||||| ||||||||||| |||    
T  23333979 tttgactgacggaccaaaaccaagaggactcaactgttagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 23334078  T
Q  219 ttaagcc 225  Q
    |||||||    
T  23334079 ttaagcc 23334085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 10736877 - 10737042
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 146  Q
    ||||||||| |||||||| || ||| |||| ||||||||||||| ||||||||||  |||||||||||| ||| |||| | |||||||||||| |  |||    
T  10736877 aatggacattcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagttaacggaggggaccaaattgattaacggagcaaaacaagaggg 10736976  T
Q  147 accaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaa 212  Q
    ||||||||||   |||||| | || ||| ||||||||| ||||    ||||| |||||||||||||    
T  10736977 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaagaaattacttaggggaccaaa 10737042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 10978218 - 10978303
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgga 132  Q
    ||||| ||||||||| || || ||| || ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  10978218 aatgggcatgcaatcgaatggttaaaattatatcaaaaatattaaacattaaaaatctaacggaggggatcactttgactgacgga 10978303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 8188139 - 8188206
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||||||||||||||||| || ||| ||||||||| |||||||| ||||||||||||||||||||    
T  8188139 tataatggacatgcaatcaaatggttaaaatcatatcagaaattttagacattaaaaaactaacggag 8188206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 1273266 - 1273195
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagggga 115  Q
    |||||||||| ||||||| || || | | |||||||||||||| ||||||||||||||||||||||||||||    
T  1273266 tataatggacctgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacggagggga 1273195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 5975932 - 5975870
Alignment:
Q  45 ataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 107  Q
    |||||||||||||||||||| || ||| ||||||||||||| |||| ||||||||||||||||    
T  5975932 ataatggacatgcaatcaaatggttaaaatcatatcaaaaactttagacattaaaaaactaac 5975870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 11797545 - 11797651
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    ||||||| |||||| ||||| |  |||||||||||||   |||||| | || ||  |||||||||||||| ||||||||||||||||||||||||| |||    
T  11797545 tttgactaacggagaaaaacaagagggaccaaaatgttgattttacgagttatgagaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 11797644  T
Q  219 ttaagcc 225  Q
    |||||||    
T  11797645 ttaagcc 11797651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 13519649 - 13519540
Alignment:
Q  52 acatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaa-----ctaacggaggggatcaatttgactgacggagcaaaaccaagggg 146  Q
    ||||||||||||| || ||| |||||||||||| ||||| |||||||||||     |||||||| ||||||||||||||  |||||||||||| |   ||    
T  13519649 acatgcaatcaaatggttaaaatcatatcaaaagttttagacattaaaaaactaaactaacggaagggatcaatttgacaaacggagcaaaacaagaagg 13519550  T
Q  147 accaaaatgt 156  Q
    ||||||||||    
T  13519549 accaaaatgt 13519540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 13520794 - 13520863
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaac 189  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||| ||||| |||||| ||| |||||||    
T  13520794 tttgactaacggagcaaaaccaagaggaccaaaatgtgggttttataatttatggaactaaagtgtaaac 13520863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 4124934 - 4124828
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 146  Q
    |||||| || |||||||| || ||| || | ||||||| |||||||||||||| |||||| | |||||| ||| || ||| |||||||||||| || |||    
T  4124934 aatggatatacaatcaaatggttaaaattaaatcaaaatttttaaacattaaacaactaatgaaggggaccaaattaactaacggagcaaaacaaaaggg 4124835  T
Q  147 accaaaa 153  Q
    |||||||    
T  4124834 accaaaa 4124828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 18695597 - 18695653
Alignment:
Q  55 tgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||||||||| | | | |||||||||||||||| ||||||||||||||||||||    
T  18695597 tgcaatcaaacggttgaaaacatatcaaaaattttagacattaaaaaactaacggag 18695653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 22812325 - 22812397
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacatt-aaaaaactaacggagggga 115  Q
    |||||||||| ||||||| || || | | |||||||||||||| ||||||||| |||||||||||||||||||    
T  22812325 tataatggacctgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaaactaacggagggga 22812397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 15857586 - 15857624
Alignment:
Q  73 atcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15857586 atcatatcaaaaatattaaacattaaaaaactaacggag 15857624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 5384317 - 5384352
Alignment:
Q  76 atatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5384317 atatcaaaaatattaaacattaaaaaactaacggag 5384352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 21389095 - 21389149
Alignment:
Q  57 caatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||||||| | | | ||||| |||||||||| ||||||||||||||||||||    
T  21389095 caatcaaacggttgaaaacatataaaaaattttagacattaaaaaactaacggag 21389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 224559 - 224596
Alignment:
Q  74 tcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  224559 tcatatcaaaaaatttagacattaaaaaactaacggag 224596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 35047595 - 35047495
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 146  Q
    ||||||||||||||| || |  ||| || |||||||||| ||||| |||||||||||||| |||  ||| |  ||||||| |||||||||||| || |||    
T  35047595 aatggacatgcaatcgaatgattaaaattatatcaaaaaatttaagcattaaaaaactaatgga-tggacctttttgactaacggagcaaaacaaaaggg 35047497  T
Q  147 ac 148  Q
    ||    
T  35047496 ac 35047495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 2e-82; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 41329363 - 41329590
Alignment:
Q  1 atgatattgctggaaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaa 100  Q
    |||||| ||||| |||||||||||||| | |||||||  |||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||    
T  41329363 atgatagtgctgaaaaaattaggtgccgatggctcactataggtataatggacatgcaatcaaacggttaatatcacatcaaaaaatttaaacattaaaa 41329462  T
Q  101 aactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatt 200  Q
    | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||    
T  41329463 atctaacggaggggatcaatttgactgacggagtaaaatcaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatt 41329562  T
Q  201 taggggaccaaatgt-caattaagccaa 227  Q
    ||||||||||||||| ||||||||||||    
T  41329563 taggggaccaaatgtccaattaagccaa 41329590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 32653673 - 32653459
Alignment:
Q  14 aaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 113  Q
    |||||||||||||  || | |||| ||||||||||||||||||||||||||||| ||| || |||||||||||||||  |||||||||||||||||| ||    
T  32653673 aaaaattaggtgctgacagttcactgtaggtataatggacatgcaatcaaacggttaaaatgatatcaaaaattttagtcattaaaaaactaacggatgg 32653574  T
Q  114 gatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaat 213  Q
    || || | |||| ||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||| ||||    
T  32653573 gaccattctgaccgacggagcaaaaccaaggggaccgaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttaagggactaaat 32653474  T
Q  214 gt-caattaagccaa 227  Q
     | ||||||||||||    
T  32653473 atccaattaagccaa 32653459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 35296753 - 35296899
Alignment:
Q  43 gtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaa 142  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||||| ||||||||  ||||||||||||| |||||||||||||||    
T  35296753 gtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattaaaaaattaacggagatgatcaatttgactaacggagcaaaaccaa 35296852  T
Q  143 ggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaac 189  Q
    ||| |||||||||||||||||||||||| | | ||||||||||||||    
T  35296853 gggtaccaaaatgtgagttttacaatttataggaccaaaatgtaaac 35296899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 41328323 - 41328217
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    ||||| |||| || |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||    
T  41328323 tttgattgactgatcaaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaa 41328224  T
Q  219 ttaagcc 225  Q
    |||||||    
T  41328223 ttaagcc 41328217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 39981421 - 39981315
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    ||||||||||| |||||||||||  |||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||| ||| ||||||| |||    
T  39981421 tttgactgacgaagcaaaaccaaaaggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaacgcacaattatttagaggatcaaatgtccaa 39981322  T
Q  219 ttaagcc 225  Q
    |||||||    
T  39981321 ttaagcc 39981315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 43442705 - 43442811
Alignment:
Q  50 ggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggacc 149  Q
    |||||||||||||||  | ||| |||| |||||||| |||| ||||||||| |||||||||||||| ||| |||||| |||||||||||| |  ||||||    
T  43442705 ggacatgcaatcaaattgttaaaatcaaatcaaaaaatttagacattaaaagactaacggaggggaccaaattgactaacggagcaaaacaagagggacc 43442804  T
Q  150 aaaatgt 156  Q
    |||||||    
T  43442805 aaaatgt 43442811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 666906 - 666742
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaag 143  Q
    |||||| |||||||||| ||| || ||| |||| |||||||| |||  ||||||||| |||||||||||||| ||| |||||| |||||||||||| |      
T  666906 tataatagacatgcaattaaatggttaaaatcaaatcaaaaaatttcgacattaaaatactaacggaggggaccaaattgactaacggagcaaaacaaga 666807  T
Q  144 gggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggac 208  Q
    |||||| |||| | | |||||  | || ||  | ||||||| ||||  |||||||||||||||||    
T  666806 gggaccgaaatattaattttatgagttatgagatcaaaatgaaaactgataattatttaggggac 666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 10956022 - 10955930
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaac 139  Q
    ||||||||  |||||||| || ||| |||| ||||||||||||| |||||||||| |||||||||||||  || |||||| ||||||||||||    
T  10956022 aatggacactcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaatctaacggaggggactaaattgactaacggagcaaaac 10955930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 26146646 - 26146730
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgg 131  Q
    |||||||||||||||    || ||| ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||    
T  26146646 aatggacatgcaatcgggtggttaaaatcatatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgactaacgg 26146730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 28326329 - 28326396
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||||||||||||||||| || ||| ||||||| ||||| |||| ||||||||||||||||||||    
T  28326329 tataatggacatgcaatcaaatggttaaaatcatattaaaaaatttagacattaaaaaactaacggag 28326396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 17288184 - 17288249
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagg 112  Q
    ||||||||||||||||||  | ||| ||||||||||||| |||| |||||||||||||||||||||    
T  17288184 aatggacatgcaatcaaatagttaaaatcatatcaaaaaatttagacattaaaaaactaacggagg 17288249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 29589206 - 29589269
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 107  Q
    ||||||||| ||| ||||||| || ||| |||| ||||||||||||||||||||||||||||||    
T  29589206 tataatggatatgaaatcaaatggttaaaatcaaatcaaaaattttaaacattaaaaaactaac 29589269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 41515173 - 41515106
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||||||||||||||||| || ||| ||||||| ||||| |||| ||||||||||| ||||||||    
T  41515173 tataatggacatgcaatcaaatggttaaaatcatataaaaaactttagacattaaaaaattaacggag 41515106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 44376644 - 44376735
Alignment:
Q  64 acggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatg 155  Q
    |||| ||| |||| |||||||| |||| |||||||||||||||||||| |||| ||||||||| | |||||||||   | ||||||||||||    
T  44376644 acggttaaaatcaaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatg 44376735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 44385511 - 44385602
Alignment:
Q  64 acggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatg 155  Q
    |||| ||| |||| |||||||| |||| |||||||||||||||||||| |||| ||||||||| | |||||||||   | ||||||||||||    
T  44385511 acggttaaaatcaaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatg 44385602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 25532321 - 25532257
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacg 108  Q
    |||||||||| ||||||| || || | | |||||||||||||| |||||||||||||||||||||    
T  25532321 tataatggacctgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacg 25532257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 45721708 - 45721779
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatca 118  Q
    |||| ||||||||||||| || ||| |||| || ||||| |||| |||||||||||||||||||| ||||||    
T  45721708 aatgaacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagaggatca 45721779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 18670448 - 18670506
Alignment:
Q  49 tggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 107  Q
    ||||| ||||||||||||||||  ||||||| |||||| ||| ||||||||||||||||    
T  18670448 tggacctgcaatcaaacggctataatcatattaaaaatattatacattaaaaaactaac 18670506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 32653735 - 32653784
Alignment:
Q  176 accaaaatgtaaacgcataattatttaggggaccaaatgt-caattaagc 224  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  32653735 accaaaatgtaaatacataattatttaggggaccaaatgtccaattaagc 32653784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 3330902 - 3330810
Alignment:
Q  14 aaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaa 106  Q
    |||||||| ||||  |||| ||||  ||| || |||| |||||||||||||||| ||| |||| |||||||| |||| ||||||| |||||||    
T  3330902 aaaaattaagtgctgacggttcactatagatacaatgaacatgcaatcaaacggttaaaatcaaatcaaaaaatttagacattaacaaactaa 3330810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 29861672 - 29861588
Alignment:
Q  48 atggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgga 132  Q
    |||||| ||||||| || |||| | |||  ||| ||||| ||| |||| ||||||||||||||  ||||||||||||||||||||    
T  29861672 atggacctgcaatctaatggctgaaatcgcatctaaaatattagacataaaaaaactaacggaatggatcaatttgactgacgga 29861588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 43931834 - 43931876
Alignment:
Q  73 atcatatcaaaaattttaaacattaaaaaactaacggagggga 115  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||    
T  43931834 atcatttcaaaaatgttagacattaaaaaactaacggagggga 43931876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 103; Significance: 7e-51; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 7074 - 6893
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaag 143  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||| | ||| |||||||||||||||| ||||||||||| ||||||||||||||||     
T  7074 tataatggacatgcaatcaaacggttaaaattatatcaaaaaatttagatattgaaaaactaacggaggg-atcaatttgaccgacggagcaaaaccaaa 6976  T
Q  144 gggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caattaagcc 225  Q
    || ||||||||||  |||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  6975 ggaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaattaagcc 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 8194 - 8308
Alignment:
Q  112 gggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaa 211  Q
    |||||||| |||||| |||||| ||||| |  |||||||||||||   |||||| | || ||| ||||||||||||||  | ||||| ||||||||||||    
T  8194 gggatcaaattgactaacggagtaaaacgagagggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttaggggaccaa 8293  T
Q  212 atg-tcaattaagcc 225  Q
    | | |||||||||||    
T  8294 aagttcaattaagcc 8308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 9853751 - 9853589
Alignment:
Q  40 taggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaac 139  Q
    ||||||||||||| |||||||||||||| ||| || |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9853751 taggtataatggatatgcaatcaaacggttaaaattatatcaaaaaatttagatattaaaaaactaacggaggggatcaatttgactgacggagcaaaac 9853652  T
Q  140 caaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattattta 202  Q
    | ||| ||||||||| | ||||||||||||| ||| |||||||| |||||  |||||||||||    
T  9853651 ccaggagaccaaaatattagttttacaatttatgggaccaaaatataaacatataattattta 9853589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 42793876 - 42793717
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggg 146  Q
    ||||||||||||||| || || ||| |||||||||||| ||||| ||||||||||| |||| ||||||| |  ||||||| |||||||||||| |  |||    
T  42793876 aatggacatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacagaggggacctttttgactaacggagcaaaacaagaggg 42793777  T
Q  147 accaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttagggg 206  Q
    |||||||||| | ||||||||||| ||| |||||||| |||||   ||||||||||||||    
T  42793776 accaaaatgttaattttacaatttatgggaccaaaatataaactggtaattatttagggg 42793717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 9854891 - 9854997
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    ||||||||||||||||||| |||| |||||||||||||  ||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||| |||    
T  9854891 tttgactgacggagcaaaatcaagaggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaa 9854990  T
Q  219 ttaagcc 225  Q
    |||||||    
T  9854991 ttaagcc 9854997  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 24191587 - 24191463
Alignment:
Q  14 aaaaattaggtgccaacggctcaccgtaggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggg 113  Q
    |||||||||||||  |||| ||||  ||| || ||||||||||||||||||||| ||| |||| |||||||| |||| ||||||| |||||||||||| |    
T  24191587 aaaaattaggtgctgacggttcactatagatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatttagacattaacaaactaacggagtg 24191488  T
Q  114 gatcaatttgactgacggagcaaaa 138  Q
    ||||||||||| | || ||||||||    
T  24191487 gatcaatttgagtaacagagcaaaa 24191463  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 38697306 - 38697170
Alignment:
Q  74 tcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtg 173  Q
    ||||||||||| ||||| ||||||||| | |||||||||||| |  ||||||||| |||||||||  || |||||||||||||  |||||| ||||| ||    
T  38697306 tcatatcaaaagttttagacattaaaatagtaacggaggggacctttttgactgagggagcaaaataaaagggaccaaaatgttggttttataatttatg 38697207  T
Q  174 gaaccaaaatgtaaacgcataattatttaggggacca 210  Q
      |||||||||||||   ||||||||||| |||||||    
T  38697206 agaccaaaatgtaaattgataattatttaagggacca 38697170  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 43203219 - 43203310
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaa 138  Q
    |||||||||||||||||| |  ||| || | |||||||| |||| |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  43203219 aatggacatgcaatcaaatgtttaaaattaaatcaaaaaatttagacattaaaaaactaacggaggggaccaaattgactgacggagcaaaa 43203310  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 45395957 - 45396042
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacgga 132  Q
    ||||||||||||||||||||| ||| ||| ||| |||||| | | ||||||| |||||||||||| ||| ||||||||||||||||    
T  45395957 aatggacatgcaatcaaacggttaaaatcgtataaaaaatatcagacattaagaaactaacggagtggaccaatttgactgacgga 45396042  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 31844541 - 31844427
Alignment:
Q  51 gacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggacca 150  Q
    |||||||||||||  || ||| |||| ||||||||||||| | ||||||  || ||||||||||| ||| |||||| |||||||||||| |  |||||||    
T  31844541 gacatgcaatcaagtggttaaaatcaaatcaaaaattttagaaattaaaggacaaacggaggggaccaaattgactaacggagcaaaacaagagggacca 31844442  T
Q  151 aaatgtgagttttac 165  Q
    |||||| | ||||||    
T  31844441 aaatgttaattttac 31844427  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 39516439 - 39516510
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatca 118  Q
    |||||||||||||||||| || ||| |||| || ||||| |||| |||||||||||||||||||| ||||||    
T  39516439 aatggacatgcaatcaaatggttaaaatcacatgaaaaaatttagacattaaaaaactaacggagaggatca 39516510  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 38697972 - 38697866
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatg-tcaa 218  Q
    ||||||| |||||||||||| |  |||||||||||||   |||||||| || |||||||||||||||||   | ||||| ||||||||||||| | ||||    
T  38697972 tttgactaacggagcaaaacaagagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaatagaaaattacttaggggaccaaaagatcaa 38697873  T
Q  219 ttaagcc 225  Q
    |||||||    
T  38697872 ttaagcc 38697866  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 22621076 - 22621136
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 107  Q
    |||||||||||||||||| |  ||| |||||||||| ||||||| ||||||||||||||||    
T  22621076 aatggacatgcaatcaaatgattaaaatcatatcaagaattttatacattaaaaaactaac 22621136  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 36757166 - 36757232
Alignment:
Q  51 gacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatc 117  Q
    |||||||||| ||| || ||| ||||||||||||| |||| ||||||||||||||| |||| |||||    
T  36757166 gacatgcaattaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaatggagaggatc 36757232  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 38158 - 38095
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||||||| ||| || ||| ||||||||||||| |||| ||||| ||||||||||||||    
T  38158 aatggacatgcaattaaatggttaaaatcatatcaaaaaatttagacatt-aaaaactaacggag 38095  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 7770171 - 7770107
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||||| |||||||| || ||| |||| || ||||| |||| ||||||||||||||||||||    
T  7770171 aatggacatacaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggag 7770107  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 7777848 - 7777784
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||||| |||||||| || ||| |||| || ||||| |||| ||||||||||||||||||||    
T  7777848 aatggacatacaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggag 7777784  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 16362585 - 16362529
Alignment:
Q  55 tgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    ||||||| ||||| | | |||||||||||||| ||| ||||||||||||||||||||    
T  16362585 tgcaatcgaacggttgaaatcatatcaaaaatattagacattaaaaaactaacggag 16362529  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 37275064 - 37274997
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||| ||||||||||||| || || | | ||||||||| |||| ||| ||||||||||||||||||||    
T  37275064 tatattggacatgcaatcgaatggttgaaatcatatcagaaatgttatacattaaaaaactaacggag 37274997  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 34616311 - 34616245
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacgga 110  Q
    |||||| ||| ||||||| || || | | ||||||| |||||| |||||||||||||||||||||||    
T  34616311 tataatagacctgcaatcgaatggttgaaatcatattaaaaatattaaacattaaaaaactaacgga 34616245  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 35945376 - 35945438
Alignment:
Q  44 tataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaa 106  Q
    |||||||||| ||||||| || || | | |||| ||||||||| |||||||||||||||||||    
T  35945376 tataatggacctgcaatcgaatggttgaaatcacatcaaaaatattaaacattaaaaaactaa 35945438  T

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Target: chr6 (Bit Score: 73; Significance: 6e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 11722890 - 11722782
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcataattatttaggggaccaaatgt-caa 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | |||||||||||| ||||||||||||| ||| ||||||| |||    
T  11722890 tttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggatcaaatgtccaa 11722791  T
Q  219 ttaagccaa 227  Q
    |||||||||    
T  11722790 ttaagccaa 11722782  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 138145 - 138223
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgac 125  Q
    |||||||||||||||  | || ||| || | |||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  138145 aatggacatgcaatcggatggttaaaattacatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgac 138223  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 146166 - 146244
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgac 125  Q
    |||||||||||||||  | || ||| || | |||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  146166 aatggacatgcaatcggatggttaaaattacatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgac 146244  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 21777496 - 21777570
Alignment:
Q  120 tttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttgtggaaccaaaatgtaaacgcata 194  Q
    ||||||||||||| |||||||||| ||||  || |||||||||||||| || ||| |||||||||||||| ||||    
T  21777496 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcata 21777570  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 18242249 - 18242317
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagggga 115  Q
    |||||||||||||||||| || ||| || | || |||||||| | ||||||||||||||||||||||||    
T  18242249 aatggacatgcaatcaaatggttaaaattaaattaaaaatttaagacattaaaaaactaacggagggga 18242317  T

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Target: scaffold0098 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 42288 - 42348
Alignment:
Q  47 aatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 107  Q
    ||||||| ||||||||||||| | | ||||||||||||| | |||||||||||| ||||||    
T  42288 aatggacctgcaatcaaacggttgaaatcatatcaaaaaatataaacattaaaatactaac 42348  T

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Target: scaffold0084 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 11875 - 11816
Alignment:
Q  52 acatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 111  Q
    |||||||||| || || ||| |||| ||||||||| ||| ||||||||||||||||||||    
T  11875 acatgcaatcgaatggttaaaatcacatcaaaaatattagacattaaaaaactaacggag 11816  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 75918 - 75859
Alignment:
Q  48 atggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaac 107  Q
    |||||| ||||||||||||| || |||||||| |||||| ||| |||| |||||||||||    
T  75918 atggacctgcaatcaaacggttattatcatattaaaaatattagacatcaaaaaactaac 75859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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