View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_33 (Length: 252)
Name: NF11871_low_33
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_33 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 36040335 - 36040084
Alignment:
| Q |
1 |
acatcataaaggggacacgtaagaaataaaatgtaaaaagggaatgaaaggaaaggccaaaacgtaggcaaatcagcgctagccgtgtttggtggttgga |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36040335 |
acataataaaggggacacgtaagaaataaaatgtaaaaagtgaatgaaaggaaaggccaaaacgtaggcaaatcagcgctagccgtgtttggtggttgga |
36040236 |
T |
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| Q |
101 |
tgcacggtgcaacattaaatggtcatggggttcgtagtgcaattttctaaggaattatggtatgatatttgacagaacataacggcatatactctatatt |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
36040235 |
tgcacggtgcaacattaaatggtcatggggctcgtagtgcaattttctaaggaattatggtatgatatttgacagaacataacagcatatactttatatt |
36040136 |
T |
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| Q |
201 |
tggaacaaatatcgtacactaatgagatagaagtcaaaggaatatttacatt |
252 |
Q |
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| T |
36040135 |
tggaacaaatatcgtacactaatgagatagaagtcaaaagaatatttacatt |
36040084 |
T |
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Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 42398321 - 42398239
Alignment:
| Q |
170 |
tgacagaacataacggcatatactctatatttggaacaaatatcgtacactaatgagatagaagtcaaaggaatatttacatt |
252 |
Q |
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| T |
42398321 |
tgacagaacataacagcatatactctatatttggaacaaatattgtacactaatgagataaaagtcaaaagaatatttacatt |
42398239 |
T |
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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 16095097 - 16095179
Alignment:
| Q |
170 |
tgacagaacataacggcatatactctatatttggaacaaatatcgtacactaatgagatagaagtcaaaggaatatttacatt |
252 |
Q |
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| T |
16095097 |
tgacagaacataacagcatatactctatatttggaacaaatattgtacactaatgagataaaattcaaaagaatatttacatt |
16095179 |
T |
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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 16088209 - 16088291
Alignment:
| Q |
170 |
tgacagaacataacggcatatactctatatttggaacaaatatcgtacactaatgagatagaagtcaaaggaatatttacatt |
252 |
Q |
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|||||||||||||| |||||||||||||||| ||| |||||| ||||| |||||||||| |||||||| ||||||||||||| |
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| T |
16088209 |
tgacagaacataacatcatatactctatatttcgaataaatattgtacattaatgagataaaagtcaaaagaatatttacatt |
16088291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 1678058 - 1678142
Alignment:
| Q |
170 |
tgacagaacataacggcatatactct--atatttggaacaaatatcgtacactaatgagatagaagtcaaaggaatatttacatt |
252 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |
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| T |
1678058 |
tgacagaacataacaacatatactctctatatttggaacaaatattgtacactaatgagataaaagtcaaaagaatatttacatt |
1678142 |
T |
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Target: scaffold0063 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 49846 - 49978
Alignment:
| Q |
6 |
ataaaggggacacgtaagaaataaaatgtaaaaagggaatgaaaggaaaggccaaaacgtaggcaaatcagcgctagccgtgtttggtggttggatgcac |
105 |
Q |
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|||||| ||||| |||||||||||||||||| ||| ||| ||||||||||| |||||| | ||| ||||| ||| || ||||| || |||||||||| |
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| T |
49846 |
ataaagtggacatgtaagaaataaaatgtaacaagtgaaggaaaggaaaggacaaaacatgggctaatcaacgcaggcaatgttttgtagttggatgcag |
49945 |
T |
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| Q |
106 |
ggtgcaacattaaatggtcatggggttcgtagt |
138 |
Q |
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||||||||||||||||||| ||||||| |||| |
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| T |
49946 |
agtgcaacattaaatggtcagggggttcatagt |
49978 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 2860575 - 2860454
Alignment:
| Q |
5 |
cataaaggggacacgtaagaaataaaatgtaaaaagggaatgaaaggaaaggccaaaacgtaggcaaatcagcgctagc-cgtgtttggtggttggatgc |
103 |
Q |
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||||||| ||||| |||||||| |||| |||| ||| ||| ||||||||||| |||||| | ||| ||| |||||| || ||||||||||||| || |
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| T |
2860575 |
cataaagtggacatgtaagaaagaaaacgtaacaagtgaaggaaaggaaagggcaaaacatgggctaataagcgctggcaaatgtttggtggttgagtgg |
2860476 |
T |
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| Q |
104 |
acggtgcaacattaaatggtca |
125 |
Q |
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| |||||||||||||||||||| |
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| T |
2860475 |
agggtgcaacattaaatggtca |
2860454 |
T |
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