View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_34 (Length: 251)
Name: NF11871_low_34
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 47419144 - 47418911
Alignment:
| Q |
12 |
atggacatcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtcaagaaactg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419144 |
atggacatcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtcaagaaactg |
47419045 |
T |
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| Q |
112 |
aaagatccaccgttcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaactacaaccattt |
211 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47419044 |
aaagatccaccattcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaactacagccattt |
47418945 |
T |
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| Q |
212 |
ttccgggacaataactggttcattatcatctctc |
245 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
47418944 |
ttccgggacaataactggttcattatcatctctc |
47418911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 47390784 - 47390554
Alignment:
| Q |
12 |
atggacatcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtcaagaaactg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47390784 |
atggacatcagtgctaaaaaacctcaggaacatgatgttcgagtagtgcaatcaaatcaattaccaacatccagttctattgctgttagtcaagaaactg |
47390685 |
T |
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| Q |
112 |
aaagatccaccgttcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaactacaaccattt |
211 |
Q |
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| T |
47390684 |
aaagatctgccgttcacatgcaaggcctaaataagcagcaacaacagcatatacatttcccatcgacatatggaggcagtggtggtaactacagccattt |
47390585 |
T |
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| Q |
212 |
ttccgggacaataactggttcattatcatct |
242 |
Q |
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||||||||||| ||| |||||| ||||||| |
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| T |
47390584 |
ttccgggacaaccactagttcatcatcatct |
47390554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 47421603 - 47421370
Alignment:
| Q |
12 |
atggacatcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtcaagaaactg |
111 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||| ||| || ||| |||||||| | |||||||||||| | |||||||||||||||| |
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| T |
47421603 |
atggacatcagtgctaaaaaatctcaggaacatgatgttcgagtagtggaaccaactcaattactaccatccagttctaacaccattagtcaagaaactg |
47421504 |
T |
|
| Q |
112 |
aaagatccaccgttcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaactacaaccattt |
211 |
Q |
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||| || | ||| || |||||| || |||| ||||||||||| ||||| |||||||||| | |||||| || ||||||| | |||| |||| ||| |
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| T |
47421503 |
aaaacaccccagtttgcacacaaggcttttataatcagcaacaacaacatattcatttcccattgccatatgaaatcagtggttgcaactttaacccttt |
47421404 |
T |
|
| Q |
212 |
ttccgggacaataactggttcattatcatctctc |
245 |
Q |
| |
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|| |||||||| ||||||||||||||||||||| |
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| T |
47421403 |
tttggggacaatcactggttcattatcatctctc |
47421370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 47407898 - 47407666
Alignment:
| Q |
12 |
atggacatcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtcaagaaactg |
111 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||||||||| || ||| || ||| |||||||| |||| ||||||| | ||| |||||||||||| |
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| T |
47407898 |
atggacattagtactaaaaaatctcaggaacatgatgttcaagcagtggaaccaactcaattactgccatctagttctaacaccatttgtcaagaaactg |
47407799 |
T |
|
| Q |
112 |
aaagatccaccgttcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaactacaaccattt |
211 |
Q |
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||| || | ||||||| |||||| || |||| ||||||||||| ||||||||||| |||||| |||||| || ||||||||| |||| || | ||| |
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| T |
47407798 |
aaaacaccccagttcacacacaaggcttttataatcagcaacaacaacatatacattttccatcgccatatgaaatcagtggtggcaactttaatccttt |
47407699 |
T |
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| Q |
212 |
ttccgggacaataactggttcattatcatctct |
244 |
Q |
| |
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|| |||| ||| |||||||||||||||||||| |
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| T |
47407698 |
tttggggaaaatcactggttcattatcatctct |
47407666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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