View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_39 (Length: 240)
Name: NF11871_low_39
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_39 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25816351 - 25816129
Alignment:
| Q |
1 |
tgtttcctggtgggtttggaaggtgcattttgtgtagaacgcatggaagagtgtggtagaaggtattgcgcagtgtgtgtgaaggtcatagtcacaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
25816351 |
tgtttcctggtgggtttggaaggtgcattttgtgtagaacgcatggaagagtgtggtagaaggtattgtgcagtgtgtgtgaaggtcattgtcacaaatg |
25816252 |
T |
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| Q |
101 |
ctgcatttgtaacgtgaacctatgcctacttccttgcagccgtcgcatttgaatggaaattcgttgtgttcgaatcttagtttgtgttttgggtggctga |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25816251 |
ctgcatttgtaacgtgaacctatgcctacttcgttgcaaccgtcgcatttgaatggaaattcgttgtgttcgaatcttagtttgtgttttgggtggctga |
25816152 |
T |
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| Q |
201 |
aatgttatatctcgctgtatttc |
223 |
Q |
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||||| |||||||| |||||||| |
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| T |
25816151 |
aatgtgatatctcgttgtatttc |
25816129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 25802239 - 25802036
Alignment:
| Q |
20 |
aaggtgcattttgtgtagaacgcatggaagagtgtggtagaaggtattgcgcagtgtgtgtgaaggtcatagtcacaaatgctgcatttgtaacgtgaac |
119 |
Q |
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||||||||||||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
25802239 |
aaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaac |
25802140 |
T |
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| Q |
120 |
ctatgcctacttccttgcagccgtcgcatttgaatggaaattcgttgtgttcgaatcttagtttgtgttttgggtggctgaaatgttatatctcgctgta |
219 |
Q |
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| T |
25802139 |
ctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgta |
25802040 |
T |
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| Q |
220 |
tttc |
223 |
Q |
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|||| |
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| T |
25802039 |
tttc |
25802036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 112288 - 112495
Alignment:
| Q |
16 |
ttggaaggtgcattttgtgtagaacgcatggaagagtgtggtagaaggtattgcgcagtgtgtgtgaaggtcatagtcacaaatgctgcatttgtaacgt |
115 |
Q |
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||||||||||||||||||||| || | || |||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||| |
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| T |
112288 |
ttggaaggtgcattttgtgtaaaatggatcgaagagtgtggtggaaggtattgcgcagtgtgtatgaaggtcgtagtcgcagatgctgcatttttaacgt |
112387 |
T |
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| Q |
116 |
gaacctatgcctacttccttgcagccgtcgcatttgaatggaaattcgttgtgttcgaatcttagtttgtgttttgggtggctgaaatgttatatctcgc |
215 |
Q |
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||| | ||||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
112388 |
gaatcgatgcctatttctttgcagccatcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcac |
112487 |
T |
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| Q |
216 |
tgtatttc |
223 |
Q |
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|||||||| |
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| T |
112488 |
tgtatttc |
112495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 12530663 - 12530528
Alignment:
| Q |
78 |
tgtgaaggtcatagtcacaaatgctgcatttgtaacgtgaacctatgcctacttccttgcagccgtcgcatttgaatggaaattcgttgtgttcgaatct |
177 |
Q |
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||||||| ||||||||||||||| |||| ||||||| ||||||||||| | ||| |||||||| || |||||||||||||| ||| ||||| ||| | |
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| T |
12530663 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccatcacatttgaatggaaactcggagtgttgaaatgt |
12530564 |
T |
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| Q |
178 |
tagtttgtgttttgggtggctgaaatgttatatctc |
213 |
Q |
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|||||| |||||| | ||||| ||||| ||||||| |
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| T |
12530563 |
tagtttatgtttttgatggctaaaatgagatatctc |
12530528 |
T |
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