View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_40 (Length: 239)
Name: NF11871_low_40
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41339123 - 41339345
Alignment:
| Q |
1 |
ttcgtacaggttttctgtgaacaagtactgtgtgtgttacacattatatataaagttctgaagagattttctttttcttctctattttcaaatcaactca |
100 |
Q |
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| T |
41339123 |
ttcgtacaggttttctgtgaacaagtactgtgtgtgttacacattatatataaagttctgaagagattttctttttcttctctattttcaaatcaactca |
41339222 |
T |
|
| Q |
101 |
actctcattttcatatgaaatgcttttatatctgtgtgactgtgcatggtttcgtcaactcatggtacaggatttgtctcaacaagttgttttttgtgtg |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41339223 |
actctcattttcatatgaaatgcttttatatttgtgtgactgtgcatggtttcgtcgactcatggtacaggatttgtctcaacaagttgttttttgtgta |
41339322 |
T |
|
| Q |
201 |
cttgaaatgttgaaagtgaacat |
223 |
Q |
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||||||| || |||||||||||| |
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| T |
41339323 |
cttgaaaggtggaaagtgaacat |
41339345 |
T |
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