View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_48 (Length: 213)
Name: NF11871_low_48
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_48 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 49703255 - 49703467
Alignment:
| Q |
1 |
ttgaattgcttaaggaactcaaagaactcggcgtggatgtgacaaaacccgaaatgagcggaatcactgccctgcataaagcagtaagtgacagaaatgt |
100 |
Q |
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| T |
49703255 |
ttgaattgcttaaggaactcaaagaactcggtgtggatgtgacaaaacccgaaatgagcggaatcactgccctgcataaagcagtaagtgacagaaatgt |
49703354 |
T |
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| Q |
101 |
agagatggtaaagttccttttggacctaggagctgaagttgatatgcaagatgatcatggctggactccaagggctttggcagaaaatcaaggccacgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49703355 |
agagatggtaaagttccttttggacctaggagctaaagttgatatgcaagatgatcatggctggactccaagggctttggcagaaaatcaaggccacgat |
49703454 |
T |
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| Q |
201 |
gaaattcaaaata |
213 |
Q |
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|||||| |||||| |
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| T |
49703455 |
gaaattaaaaata |
49703467 |
T |
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