View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11871_low_5 (Length: 695)

Name: NF11871_low_5
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11871_low_5
NF11871_low_5
[»] chr4 (3 HSPs)
chr4 (17-684)||(42899677-42900348)
chr4 (329-419)||(69709-69799)
chr4 (405-470)||(49499523-49499588)
[»] chr5 (10 HSPs)
chr5 (99-287)||(25101882-25102066)
chr5 (99-287)||(25160975-25161159)
chr5 (345-456)||(104645-104756)
chr5 (336-470)||(25101601-25101734)
chr5 (336-470)||(25160694-25160827)
chr5 (329-419)||(6309113-6309203)
chr5 (329-379)||(38001336-38001386)
chr5 (252-303)||(42861625-42861676)
chr5 (345-379)||(6309057-6309091)
chr5 (405-470)||(4557678-4557743)
[»] chr8 (5 HSPs)
chr8 (99-268)||(3189411-3189579)
chr8 (329-470)||(22635704-22635844)
chr8 (345-470)||(22815997-22816121)
chr8 (329-458)||(3189123-3189251)
chr8 (402-470)||(40841198-40841266)
[»] chr3 (1 HSPs)
chr3 (345-470)||(17542377-17542501)
[»] chr2 (2 HSPs)
chr2 (345-418)||(44788945-44789018)
chr2 (336-379)||(40729230-40729273)
[»] chr6 (4 HSPs)
chr6 (402-470)||(32449938-32450006)
chr6 (403-475)||(24163349-24163421)
chr6 (252-303)||(13773328-13773379)
chr6 (402-438)||(26182393-26182429)
[»] chr1 (4 HSPs)
chr1 (402-470)||(35761725-35761793)
chr1 (252-303)||(18472833-18472884)
chr1 (402-453)||(33007389-33007439)
chr1 (247-287)||(25921695-25921735)
[»] scaffold0013 (2 HSPs)
scaffold0013 (390-470)||(242716-242795)
scaffold0013 (331-379)||(242847-242895)
[»] chr7 (6 HSPs)
chr7 (206-326)||(7589256-7589374)
chr7 (358-400)||(18367102-18367144)
chr7 (405-470)||(21491168-21491233)
chr7 (252-293)||(48653752-48653793)
chr7 (402-470)||(22078093-22078161)
chr7 (351-379)||(49170106-49170134)


Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 17 - 684
Target Start/End: Complemental strand, 42900348 - 42899677
Alignment:
Q  17 atatataactgattattatttagagcagggaagcaatagttccattattttctttactcttaaggnnnnnnnnnnnnnnnnngagtaagtggtatggaca 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||                 ||||||||||||||||||    
T  42900348 atatttaactgattattatttagagcagggaagcaatagttccattattttctttacacttacggaaaaaaaaaaaga----gagtaagtggtatggaca 42900253  T
Q  117 ataaaatgaggttatcaattattcatgaatttataagggtgtaaagacttaatagataaactcaggtgaacgttagattcttttatgtgtgggtatatat 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42900252 ataaaatgaggttatcaattattcatgaatttataagtgtgtaaagacttaatagataaactcaggtgaacgttagattcttttatgtgtgggtatatat 42900153  T
Q  217 ttctgactgttgaacataaatttgagagtgtatgaaactgaaataataagaagagaaataagacttttatggaagatctcatttgtccggtgcaggttaa 316  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  42900152 ttctgactgttgaacataaattttagagtgtatgaaactaaaataataagaagagaaataagacttttatggaaaatctcatttgtcaggtgcaggttaa 42900053  T
Q  317 tgtgttattactt-------ggtgctttagtgacaggttacaattatattctgtgtggtgtcttagtggcaagattatatcatattgcatttattttcat 409  Q
    |||||||||||||       ||||| ||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  42900052 tgtgttattactttctgtgtggtgccttagtgacatgttacaattatattctgtgtggtgttttagtgacgagattatatcatattgcatttattttcat 42899953  T
Q  410 aatcatgcattaatatatgcatctgtgtgatgctttagtggcggattatttctgtgtggtgtcttaatggcgggctgaatata-ccagatcatatagtct 508  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||| || |||||||||||||    
T  42899952 aatcatgcattaatatatgcatctgtgtggtgctttaatggcggattatttctgtgtggtgttttaatgacgggctgaatatatccggatcatatagtct 42899853  T
Q  509 tagaaatcattgggtggagttcattcctgccggtgaaattatgcacatttgcaaaataaagaaaaaattaataatgacaagatgatcgaaatttgttcat 608  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42899852 tagaaatgattgggtggagtccattcctgccggtgaaattatgcacatttgcaaaataaagaaaaaattaataatgacaagatgatcgaaatttgttcat 42899753  T
Q  609 gtgatatatattcatattccactatggtacctagatctataagcaaactaaatatgcaacgtggtgagtgatgccc 684  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  42899752 gtgatatatattcatattccactatggttcctagatctataagcaaactagatatgcaacgtggtgagtgatgccc 42899677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 329 - 419
Target Start/End: Original strand, 69709 - 69799
Alignment:
Q  329 tggtgctttagtgacaggttacaattatattctgtgtggtgtcttagtggcaagattatatcatattgcatttattttcataatcatgcat 419  Q
    |||||| |||||| | |||||| |||||||||||||||||| |||||||||  | | |||||||||||||||||||||||| |||||||||    
T  69709 tggtgccttagtggcgggttacgattatattctgtgtggtgccttagtggcgggttaatatcatattgcatttattttcatgatcatgcat 69799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 49499523 - 49499588
Alignment:
Q  405 ttcataatcatgcattaatatatgcatctgtgtgatgctttagtggcggattatttctgtgtggtg 470  Q
    ||||| |||||||||||  ||||||||||||||| ||| |  ||||||| ||||||||||||||||    
T  49499523 ttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgggttatttctgtgtggtg 49499588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 99 - 287
Target Start/End: Complemental strand, 25102066 - 25101882
Alignment:
Q  99 gagtaagtggtatggacaataaaatgaggttatcaattattcatgaatttataagggtgtaaagacttaatagataaactcaggtgaacgttagattctt 198  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||    
T  25102066 gagttagtggtatggacaataaa-tgaggttatcaattattcatgaatttataagtgtggaaagacttaatagataaactcacgtgaaagttagattctt 25101968  T
Q  199 ttatgtgtgggtatatatttctgactgttgaacataaatttgagagtgtatgaaactgaaataataagaagagaaataagacttttatg 287  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||||    
T  25101967 ttatgtgtgggtgtatgtttctgactgttgaacataaatttgagagtgtatggaactgaaataataagaa---caataagacttttatg 25101882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 99 - 287
Target Start/End: Complemental strand, 25161159 - 25160975
Alignment:
Q  99 gagtaagtggtatggacaataaaatgaggttatcaattattcatgaatttataagggtgtaaagacttaatagataaactcaggtgaacgttagattctt 198  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||    
T  25161159 gagttagtggtatggacaataaa-tgaggttatcaattattcatgaatttataagtgtggaaagacttaatagataaactcacgtgaaagttagattctt 25161061  T
Q  199 ttatgtgtgggtatatatttctgactgttgaacataaatttgagagtgtatgaaactgaaataataagaagagaaataagacttttatg 287  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||||    
T  25161060 ttatgtgtgggtgtatgtttctgactgttgaacataaatttgagagtgtatggaactgaaataataagaa---caataagacttttatg 25160975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 345 - 456
Target Start/End: Original strand, 104645 - 104756
Alignment:
Q  345 ggttacaattatattctgtgtggtgtcttagtggcaagattatatcatattgcatttattttcataatcatgcattaatatatgcatctgtgtgatgctt 444  Q
    ||||||||||||||| ||||||||||||||||| || |   |||||||||||||||||||||||| |||||| ||||  |||||||||| |||| ||| |    
T  104645 ggttacaattatattatgtgtggtgtcttagtgacaggtaaatatcatattgcatttattttcatgatcatgtattagcatatgcatctctgtggtgcct 104744  T
Q  445 tagtggcggatt 456  Q
    || |||||||||    
T  104745 taatggcggatt 104756  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 336 - 470
Target Start/End: Complemental strand, 25101734 - 25101601
Alignment:
Q  336 ttagtgacaggttacaattatattctgtgtggtgtcttagtggcaagattatatcatattgcatttattttcataatcatgcattaatatatgcatctgt 435  Q
    |||||| | |||| || ||||||||||||||||| || ||||||| | | ||||||||||||||| |||||||| |||||||| |  |||||||||||||    
T  25101734 ttagtggcgggttgcacttatattctgtgtggtgcctcagtggcaggttaatatcatattgcattcattttcatgatcatgca-tggtatatgcatctgt 25101636  T
Q  436 gtgatgctttagtggcggattatttctgtgtggtg 470  Q
    ||| ||| |  ||||||| ||||||||||||||||    
T  25101635 gtggtgcctgtgtggcgggttatttctgtgtggtg 25101601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 336 - 470
Target Start/End: Complemental strand, 25160827 - 25160694
Alignment:
Q  336 ttagtgacaggttacaattatattctgtgtggtgtcttagtggcaagattatatcatattgcatttattttcataatcatgcattaatatatgcatctgt 435  Q
    |||||| | |||| || ||||||||||||||||| || ||||||| | | ||||||||||||||| |||||||| |||||||| |  |||||||||||||    
T  25160827 ttagtggcgggttgcacttatattctgtgtggtgcctcagtggcaggttaatatcatattgcattcattttcatgatcatgca-tggtatatgcatctgt 25160729  T
Q  436 gtgatgctttagtggcggattatttctgtgtggtg 470  Q
    ||| ||| |  ||||||| ||||||||||||||||    
T  25160728 gtggtgcctgtgtggcgggttatttctgtgtggtg 25160694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 329 - 419
Target Start/End: Original strand, 6309113 - 6309203
Alignment:
Q  329 tggtgctttagtgacaggttacaattatattctgtgtggtgtcttagtggcaagattatatcatattgcatttattttcataatcatgcat 419  Q
    |||||| |||||| | |||||| |||||||||||||||||| |||||||||  | | |||||||||||||||||||||||| |||||||||    
T  6309113 tggtgccttagtggcgggttactattatattctgtgtggtgccttagtggcgggttaatatcatattgcatttattttcatgatcatgcat 6309203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 38001336 - 38001386
Alignment:
Q  329 tggtgctttagtgacaggttacaattatattctgtgtggtgtcttagtggc 379  Q
    ||||||||||||| |  |||| |||||||||||||||||||||||||||||    
T  38001336 tggtgctttagtggcgagttataattatattctgtgtggtgtcttagtggc 38001386  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 42861625 - 42861676
Alignment:
Q  252 aactgaaataataagaagagaaataagacttttatggaagatctcatttgtc 303  Q
    |||||||||||||||||||||||| || |||||||| ||||| || ||||||    
T  42861625 aactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtc 42861676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 379
Target Start/End: Original strand, 6309057 - 6309091
Alignment:
Q  345 ggttacaattatattctgtgtggtgtcttagtggc 379  Q
    |||||| ||||||||||||||||||||||||||||    
T  6309057 ggttactattatattctgtgtggtgtcttagtggc 6309091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 470
Target Start/End: Complemental strand, 4557743 - 4557678
Alignment:
Q  405 ttcataatcatgcattaatatatgcatctgtgtgatgctttagtggcggattatttctgtgtggtg 470  Q
    ||||| |||||||||||  |||||||||| |||| ||| |  ||||||| ||||||||||||||||    
T  4557743 ttcatgatcatgcattagcatatgcatctctgtggtgcctgtgtggcgggttatttctgtgtggtg 4557678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 5e-55; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 99 - 268
Target Start/End: Complemental strand, 3189579 - 3189411
Alignment:
Q  99 gagtaagtggtatggacaataaaatgaggttatcaattattcatgaatttataagggtgtaaagacttaatagataaactcaggtgaacgttagattctt 198  Q
    |||| |||| |||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | |||||||||||    
T  3189579 gagttagtgatatggacaataaac-gaggttatcaattattcatgaatttataagtgtggaaagacttaatagataaactcaggtggaagttagattctt 3189481  T
Q  199 ttatgtgtgggtatatatttctgactgttgaacataaatttgagagtgtatgaaactgaaataataagaa 268  Q
     || |||||||  ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3189480 ctaagtgtgggagtatgtttctgactgttgaacataaatttgagagtgtatggaactgaaataataagaa 3189411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 329 - 470
Target Start/End: Complemental strand, 22635844 - 22635704
Alignment:
Q  329 tggtgctttagtgacaggttacaattatattctgtgtggtgtcttagtggcaagattatatcatattgcatttattttcataatcatgcattaatatatg 428  Q
    |||||| |||||| |||||| |||||||||||||||||||| || ||||||  | | ||||||||||||||| |||||||| |||||||||    |||||    
T  22635844 tggtgccttagtggcaggttgcaattatattctgtgtggtgcctcagtggcgggttaatatcatattgcattcattttcatgatcatgcatggc-atatg 22635746  T
Q  429 catctgtgtgatgctttagtggcggattatttctgtgtggtg 470  Q
    |||||||||| ||| |  ||||||  |||||||||| |||||    
T  22635745 catctgtgtggtgcctgtgtggcgagttatttctgtatggtg 22635704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 345 - 470
Target Start/End: Complemental strand, 22816121 - 22815997
Alignment:
Q  345 ggttacaattatattctgtgtggtgtcttagtggcaagattatatcatattgcatttattttcataatcatgcattaatatatgcatctgtgtgatgctt 444  Q
    ||||||||||||||| ||||||||| |||||||||  | | |||||||| ||||||||||||||| |||||||||    ||||||||||||| | ||| |    
T  22816121 ggttacaattatattatgtgtggtgccttagtggcgggttaatatcatactgcatttattttcatgatcatgcatggc-atatgcatctgtgcggtgcct 22816023  T
Q  445 tagtggcggattatttctgtgtggtg 470  Q
      || |||| ||||||||||||||||    
T  22816022 gtgtagcgggttatttctgtgtggtg 22815997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 329 - 458
Target Start/End: Complemental strand, 3189251 - 3189123
Alignment:
Q  329 tggtgctttagtgacaggttacaattatattctgtgtggtgtcttagtggcaagatta-tatcatattgcatttattttcataatcatgcattaatatat 427  Q
    |||||| |||||| | |||| |||||||||||||||||||| ||  |||||  ||||| |||||||||||||| |||||||| |||||||| | | ||||    
T  3189251 tggtgccttagtggcgggttgcaattatattctgtgtggtgcctcggtggcg-gattaatatcatattgcattcattttcatgatcatgca-tgacatat 3189154  T
Q  428 gcatctgtgtgatgctttagtggcggattat 458  Q
    |||| |||||| |||||  ||||||| ||||    
T  3189153 gcatttgtgtggtgcttgtgtggcgggttat 3189123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 470
Target Start/End: Complemental strand, 40841266 - 40841198
Alignment:
Q  402 attttcataatcatgcattaatatatgcatctgtgtgatgctttagtggcggattatttctgtgtggtg 470  Q
    |||||||| |||||||||||  ||||||||||||||| ||| |  ||||||| |||||||| |||||||    
T  40841266 attttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggcttatttctatgtggtg 40841198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 345 - 470
Target Start/End: Complemental strand, 17542501 - 17542377
Alignment:
Q  345 ggttacaattatattctgtgtggtgtcttagtggcaagattatatcatattgcatttattttcataatcatgcattaatatatgcatctgtgtgatgctt 444  Q
    |||||| |||||||||||||||||| |||||||||  | | |||||||||||||||||||||| | |||||||||    ||||| ||||||||| ||| |    
T  17542501 ggttactattatattctgtgtggtgccttagtggcgggttaatatcatattgcatttattttcgtgatcatgcatcgc-atatgtatctgtgtggtgcct 17542403  T
Q  445 tagtggcggattatttctgtgtggtg 470  Q
      ||||||| ||||||||||||||||    
T  17542402 gtgtggcgggttatttctgtgtggtg 17542377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 44788945 - 44789018
Alignment:
Q  345 ggttacaattatattctgtgtggtgtcttagtggcaagattatatcatattgcatttattttcataatcatgca 418  Q
    ||||||||||||||||||||||||| |||||||||  | | |||||||||||||||||||||||| ||||||||    
T  44788945 ggttacaattatattctgtgtggtgccttagtggcgggctaatatcatattgcatttattttcatgatcatgca 44789018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 40729273 - 40729230
Alignment:
Q  336 ttagtgacaggttacaattatattctgtgtggtgtcttagtggc 379  Q
    |||||| ||||||| ||||||||||||||||||| |||||||||    
T  40729273 ttagtggcaggttataattatattctgtgtggtgccttagtggc 40729230  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 402 - 470
Target Start/End: Complemental strand, 32450006 - 32449938
Alignment:
Q  402 attttcataatcatgcattaatatatgcatctgtgtgatgctttagtggcggattatttctgtgtggtg 470  Q
    |||||||| |||||||||||  ||||||||||||||| ||| |  ||||||| ||||||||||||||||    
T  32450006 attttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgggttatttctgtgtggtg 32449938  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 24163349 - 24163421
Alignment:
Q  403 ttttcataatcatgcattaatatatgcatctgtgtgatgctttagtggcggattatttctgtgtggtgtctta 475  Q
    ||||||| || ||||||||  ||||| ||||||||| ||  |||||| | |||||||||||||||||||||||    
T  24163349 ttttcatgattatgcattagcatatgtatctgtgtggtgtcttagtgacagattatttctgtgtggtgtctta 24163421  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 13773379 - 13773328
Alignment:
Q  252 aactgaaataataagaagagaaataagacttttatggaagatctcatttgtc 303  Q
    |||||||||||||||||||||||| || |||||||| ||||| || ||||||    
T  13773379 aactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtc 13773328  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 26182429 - 26182393
Alignment:
Q  402 attttcataatcatgcattaatatatgcatctgtgtg 438  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  26182429 attttcatgatcatgcattaatgtatgcatctgtgtg 26182393  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 402 - 470
Target Start/End: Complemental strand, 35761793 - 35761725
Alignment:
Q  402 attttcataatcatgcattaatatatgcatctgtgtgatgctttagtggcggattatttctgtgtggtg 470  Q
    |||||||| |||||||||||  ||||||||||||||| ||| |  ||||||| ||||||||||||||||    
T  35761793 attttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgggttatttctgtgtggtg 35761725  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 18472884 - 18472833
Alignment:
Q  252 aactgaaataataagaagagaaataagacttttatggaagatctcatttgtc 303  Q
    |||||||||||||||||||||||| || |||||||| ||||| || ||||||    
T  18472884 aactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtc 18472833  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 33007439 - 33007389
Alignment:
Q  402 attttcataatcatgcattaatatatgcatctgtgtgatgctttagtggcgg 453  Q
    |||||||||||||||||| |  ||||||||||||||| ||||||||||||||    
T  33007439 attttcataatcatgcat-agcatatgcatctgtgtggtgctttagtggcgg 33007389  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 25921695 - 25921735
Alignment:
Q  247 tatgaaactgaaataataagaagagaaataagacttttatg 287  Q
    |||| |||||||||||||||||||  |||||||||||||||    
T  25921695 tatggaactgaaataataagaagaacaataagacttttatg 25921735  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 242795 - 242716
Alignment:
Q  390 catattgcatttattttcataatcatgcattaatatatgcatctgtgtgatgctttagtggcggattatttctgtgtggtg 470  Q
    |||||||||||||||||||| ||| ||||| |  |||||||| |||||| ||| |  ||||||| ||||||||||||||||    
T  242795 catattgcatttattttcatgatcttgcat-agcatatgcatatgtgtggtgcctgtgtggcgggttatttctgtgtggtg 242716  T

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Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 242895 - 242847
Alignment:
Q  331 gtgctttagtgacaggttacaattatattctgtgtggtgtcttagtggc 379  Q
    |||| |||||| |||||||| |||||||||||||||||| ||| |||||    
T  242895 gtgccttagtggcaggttactattatattctgtgtggtgccttcgtggc 242847  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 326
Target Start/End: Complemental strand, 7589374 - 7589256
Alignment:
Q  206 tgggtatatatttctgactgttgaacataaatttgagagtgt-atgaaactgaaataataagaagagaaataagacttttatggaagatctcatttgtcc 304  Q
    ||||||||||||| |||| ||||||||||||||  | | ||| ||  ||||||||||| || ||||  |||||||||||||||||||| ||| ||||||     
T  7589374 tgggtatatattt-tgaccgttgaacataaattcaaaactgtcatagaactgaaataagaaaaaga--aataagacttttatggaagacctcttttgtca 7589278  T
Q  305 ggtgcaggttaatgtgttatta 326  Q
     |||||   |||||||||||||    
T  7589277 tgtgcattataatgtgttatta 7589256  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 18367144 - 18367102
Alignment:
Q  358 ttctgtgtggtgtcttagtggcaagattatatcatattgcatt 400  Q
    |||||||||||| |||||||||| ||| |||||||||||||||    
T  18367144 ttctgtgtggtgccttagtggcaggataatatcatattgcatt 18367102  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 470
Target Start/End: Complemental strand, 21491233 - 21491168
Alignment:
Q  405 ttcataatcatgcattaatatatgcatctgtgtgatgctttagtggcggattatttctgtgtggtg 470  Q
    ||||| |||||||||||  ||||||||||||||| ||| |  ||||||  ||||||||||||||||    
T  21491233 ttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgtgttatttctgtgtggtg 21491168  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 48653793 - 48653752
Alignment:
Q  252 aactgaaataataagaagagaaataagacttttatggaagat 293  Q
    |||||||||||||||||||||||| || |||||||| |||||    
T  48653793 aactgaaataataagaagagaaatgagccttttatgaaagat 48653752  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 402 - 470
Target Start/End: Original strand, 22078093 - 22078161
Alignment:
Q  402 attttcataatcatgcattaatatatgcatctgtgtgatgctttagtggcggattatttctgtgtggtg 470  Q
    |||||||| |||||||||||  ||||||||||||||| ||| |  ||||||  |||||| |||||||||    
T  22078093 attttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgtgttatttatgtgtggtg 22078161  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 351 - 379
Target Start/End: Complemental strand, 49170134 - 49170106
Alignment:
Q  351 aattatattctgtgtggtgtcttagtggc 379  Q
    |||||||||||||||||||||||||||||    
T  49170134 aattatattctgtgtggtgtcttagtggc 49170106  T

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