View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_7 (Length: 589)
Name: NF11871_low_7
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 47782368 - 47782941
Alignment:
| Q |
1 |
agagttttgtacagtagtttattcgccatgatgcggcatggttcatgtttctatcccgtcgctgcttctaaagaagagactccccattttgtaagatgaa |
100 |
Q |
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| T |
47782368 |
agagttttgtacagtagtttattcgccatgatgtggcatggttcgtgtttctatcccgtcgctgcttctaaagaagaggctcccctttttgtaagatgaa |
47782467 |
T |
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| Q |
101 |
gaaagaatatgtacagtatgggcgagagcaaagagatgatcttctcgccaattgtggttggtctagttggtaaggagcaaactcagaccccacaaaggtg |
200 |
Q |
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| T |
47782468 |
gaaagaatgtgtacagtatgggcgagagcaaagagatgatcttctcgccaattgtgattggtctagttggtaaggagcaaactcagaccccacaaaggtg |
47782567 |
T |
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| Q |
201 |
tgagttcaatttttgatgacagctttatgacttcgttggtgcacaatttatatgtacctgtgagctctttgaactttatcttcactattgatagnnnnnn |
300 |
Q |
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| T |
47782568 |
tgagttcaatttttgatgacagctttatgacttcgttggtgcacaatttatatgtacctgtgagctctttgaactttatcttcactattgatagaaaaaa |
47782667 |
T |
|
| Q |
301 |
nntacttgagagaatccatttcagggtgacaccacaatgaatacatttcctatcaccgaagtatgtggaactcttaatagtctctctcctatgacttcc- |
399 |
Q |
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| T |
47782668 |
aatacttgagagaatccatttcagggtgacaccacaatgaatacatttcctatcaccaaagtatgtggaactcttaatagtctctctcctatgacttcct |
47782767 |
T |
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| Q |
400 |
ttattattttcctacatcgacttcatagtttgttaagcatgaaatgcgagatagccttcacaatgaaaagctagtttaatttctaattgggatcatccct |
499 |
Q |
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| T |
47782768 |
tttttattttcctacatcgacttcatagtttgttaagcatgaaatgcgagatagccttcacaatgaaaagctagtttaatttctaattgggatcatccct |
47782867 |
T |
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| Q |
500 |
gtagtaatgagatgaattatgttttcgaaatggaagtatataagaactcagcataaaagtaaacaacggaaatg |
573 |
Q |
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| T |
47782868 |
gtagtaatgagatgaattatgttttcgaaatggaagtatataagaactcaacataaaagtaaacaacggaaatg |
47782941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 531
Target Start/End: Original strand, 39382057 - 39382103
Alignment:
| Q |
485 |
attgggatcatccctgtagtaatgagatgaattatgttttcgaaatg |
531 |
Q |
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| T |
39382057 |
attgggatcatccctgtagtaattggatgaattaagttttcgaaatg |
39382103 |
T |
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