View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11871_low_9 (Length: 494)
Name: NF11871_low_9
Description: NF11871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11871_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Complemental strand, 5744894 - 5744432
Alignment:
| Q |
18 |
aaagctcatcaagctgtttttgtttcctcattcgcgaccggcgtgctgactctcggttcgataccattcttcgatgttttctttcgttgattagacctag |
117 |
Q |
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| T |
5744894 |
aaagctcatcaagctgtttttgtttcctcattcgcgaccggcgtgctgactctcggttcgataccattcttcgatgttttctttcgttgattagacctag |
5744795 |
T |
|
| Q |
118 |
gttttgttcgtccgcttcgtcggaagttgagttgctgcttatgcatgacgatggaggactgaagtcttggagaatttgaatagggttttggttgaaacca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744794 |
gttttgttcgtccgcttcgtcggaagttgagttgctgcttatgcatgaggatggaggactgaagtcttggagaatttgaatagggttttggttgaaacca |
5744695 |
T |
|
| Q |
218 |
tagaattggttggagagttttggatgttgaggtgtttggatggtgttttggatcatgttatagttacatggtggatagggagatggatctgaatatggga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744694 |
tagaattggttggagagttttggatgttgaggtgtttggatggtgttttggatcatgttatagttacatggtggatagggagatggatctgaatatggga |
5744595 |
T |
|
| Q |
318 |
gtaaataattgagtcctgtattaatctctttggtttgcatggtggaataatgaatataagattatgaggatttgaagcaaaaattgttggagtaaggaat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
5744594 |
gtaaataattgagtcctgtattaatctctttggtttgcatggtggaataatgaatataagattgtgaggatttgaagcaaaaattgttggagtatggaat |
5744495 |
T |
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| Q |
418 |
ttaatttgatttggagatggatggaatatgagtgggactagttagtatatatagggagggaaa |
480 |
Q |
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| T |
5744494 |
ttaatttgatttggagatggatggaaaatgagtgggactagttagtatatatagggagggaaa |
5744432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 6066900 - 6066753
Alignment:
| Q |
18 |
aaagctcatcaagctgtttttgtttcctcattcgcgaccggcgtgctgactctcggttcgataccattcttcgatgttttctttcgttgattagacctag |
117 |
Q |
| |
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||||||||||||| ||||| || |||||||| || || || || ||||| || ||||| |||| ||| |||| ||||| || || ||||| |||| || |
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| T |
6066900 |
aaagctcatcaaggtgtttctgcttcctcatgcgtgaacgacgcgctgattcgcggtttgatatcatccttctgtgtttcctctcattgatgagactaag |
6066801 |
T |
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| Q |
118 |
gttttgttcgtccgcttcgtcggaagttgagttgctgcttatgcatga |
165 |
Q |
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| T |
6066800 |
gttttgttcatctgcttcatcagaagttgagttgctgcttatgcatga |
6066753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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