View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11872_high_10 (Length: 332)
Name: NF11872_high_10
Description: NF11872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11872_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 3723931 - 3724203
Alignment:
| Q |
15 |
aacctgtgacctataacaaaatttatgattatgcccttttcttcctgcaacttctttctatcctcagctgatggattatttatttcaaaccacgggtcag |
114 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723931 |
aacctgcgacctataacaaaacgtatgattatgcccttttcttcctccaacttctttctatcctcagctgatggattatttatttcaaaccacgggtcag |
3724030 |
T |
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| Q |
115 |
atgtattaggtacatagaatcaaaaagtgaagagaaaaaacaaggatacactgaaatatcattgaaccaccttgtggcatccaagttcctcgaacagaat |
214 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3724031 |
atgcattaggtacatagaatcaaaaagtgaagagaaaaaacaaggatacactgaaatatcattgaaccaccttgtggcatccaagttcctcgaacagaat |
3724130 |
T |
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| Q |
215 |
ctcttcgtttcctgctactgaaagctgtattgatccctataacaatgaaacattttttccttggagttgattc |
287 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3724131 |
ctcttcgtttcctgctactaaaagctgtattgatccctataacaatgaaacattttttccttggagttgattc |
3724203 |
T |
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