View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11872_high_11 (Length: 326)
Name: NF11872_high_11
Description: NF11872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11872_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 26 - 304
Target Start/End: Complemental strand, 8936446 - 8936168
Alignment:
| Q |
26 |
atcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattacttgtacaattataatttca |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8936446 |
atcaactacaataactacacaattcggttagttgatcccggaattgaagagggtgattgctccaccattcctcactattacttatacaattataatttca |
8936347 |
T |
|
| Q |
126 |
gcagctcttatatcttcaattctgttgatccatatcaaacttaccagaatagaatagttgatactactatatatgaaaatgcagaagctcttactttgga |
225 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8936346 |
gcagctcttatatctacgattctgttgatccatatcaaacttaccagagaagaatagttgatactactatatatgaaaatgcagaagctcttactttgga |
8936247 |
T |
|
| Q |
226 |
aattcttaaatatcctacatcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagtgatgat |
304 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8936246 |
aattcttaaatatcctacaacattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgat |
8936168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 26 - 304
Target Start/End: Complemental strand, 8959967 - 8959707
Alignment:
| Q |
26 |
atcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattacttgtacaattataatttca |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8959967 |
atcaactacaataactacacaattcggttagttgatcccggaattgaagagggtgattgctccaccattcctcactattacttgtacaattataatttca |
8959868 |
T |
|
| Q |
126 |
gcagctcttatatcttcaattctgttgatccatatcaaacttaccagaatagaatagttgatactactatatatgaaaatgcagaagctcttactttgga |
225 |
Q |
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| T |
8959867 |
gcagctcttatatctacgattctgttgatccatatcaaacttaccagagtagaatagttgatactactagatataaatattcaccagctcttactttgg- |
8959769 |
T |
|
| Q |
226 |
aattcttaaatatcctacatcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagtgatgat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8959768 |
-----------------catcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgat |
8959707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 26 - 304
Target Start/End: Complemental strand, 8924805 - 8924545
Alignment:
| Q |
26 |
atcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactattacttgtacaattataatttca |
125 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| || |||||| ||||||||| |||||||||||||||| |
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| T |
8924805 |
atcaactacaataactacacaatcagaatagttgatcccggaattgaagagggtgattgctcctcctttcctcgctattacttatacaattataatttca |
8924706 |
T |
|
| Q |
126 |
gcagctcttatatcttcaattctgttgatccatatcaaacttaccagaatagaatagttgatactactatatatgaaaatgcagaagctcttactttgga |
225 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| || || || |||||||||||||| |
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| T |
8924705 |
gcagctcttatatcttcgattctgttgatccatatcaaacataccagagcagaatagttgatactactagatataaatattcaccagctcttactttgg- |
8924607 |
T |
|
| Q |
226 |
aattcttaaatatcctacatcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagtgatgat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8924606 |
-----------------catcattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgat |
8924545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 9335581 - 9335503
Alignment:
| Q |
26 |
atcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactatt |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||| |||| ||||||||| ||||| |
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| T |
9335581 |
atcaactacataaactacacaattcggttagttgatccaggaattgaagaaggtgattactcctccattcctcgctatt |
9335503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 8945940 - 8945879
Alignment:
| Q |
26 |
atcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctc |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |
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| T |
8945940 |
atcaactacaataactacacaattcggttagttgatcctggaataaaagaaggtgattgctc |
8945879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 9245141 - 9245219
Alignment:
| Q |
26 |
atcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctcactatt |
104 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||| || |||||| ||||| |
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| T |
9245141 |
atcaactacaacaactacacaattttgttagttgatcccggaattgaagagggtagttgctcctcccttcctcgctatt |
9245219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 9475378 - 9475450
Alignment:
| Q |
26 |
atcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctc |
98 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||| ||||||||||||| |||||||| | ||||||||| |
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| T |
9475378 |
atcaactacgataactacacaatcagactagttgatcctggaattcaagaggatgattgcttctccattcctc |
9475450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 9359304 - 9359247
Alignment:
| Q |
41 |
tacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctc |
98 |
Q |
| |
|
|||||||||||| |||||||||| | |||| |||||||| |||||||| ||||||||| |
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|
| T |
9359304 |
tacacaattcggctagttgatccagtaattgaagagggtaattgctcctccattcctc |
9359247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 15912869 - 15912941
Alignment:
| Q |
26 |
atcaactacaataactacacaattcggttagttgatcccggaattcaagagggtgattgctccaccattcctc |
98 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||| |||| | |||||||||||||||||| ||||||||| |
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| T |
15912869 |
atcaactataaaaactacacaattaggttagttgatgccgggttgcaagagggtgattgctcctccattcctc |
15912941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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