View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11872_high_1_N (Length: 598)
Name: NF11872_high_1_N
Description: NF11872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11872_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 151 - 562
Target Start/End: Complemental strand, 25468752 - 25468341
Alignment:
| Q |
151 |
tgcattcaaccctttaaaaatagtataactgatttgttagatcgacctcatttgttattaagggatacagccattttagtttctgattatgaattttgtt |
250 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||||| |||| ||| || | |
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| T |
25468752 |
tgcattcaaccctttaaaaaaagtataagtgatttgttagatagacctcatttgttattaaggaatacaaccattttagtctctgactatgcattgtgct |
25468653 |
T |
|
| Q |
251 |
gttaaaatggtccctactcgggataaaatgtaaaatagtccctggatgtatacctatgttaaccaattaagtccttgacgttaaaattgaccattcaaag |
350 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25468652 |
gtcaaaatggtccctactcgggataaaatgtaaaatagtccctgaatgtatacctatgttaaccaattaagtccttgacgttaaaattgaccattaaaag |
25468553 |
T |
|
| Q |
351 |
atgagctgacaattgttttgacaatcaaggatgtatgatgtggatccatggactaaagtgacaaaaaacaattagaaattatcataatgcaaaatagtac |
450 |
Q |
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| T |
25468552 |
atgagctgacaattgttttgacaatcaaggatgtatgatgtggatctatggactaaagtgacaaaaaacaattagaaattatcataatgcaaaatagtac |
25468453 |
T |
|
| Q |
451 |
aattttgttttaaactgatttatgtaaaattctactgttaatggttccaaaagtcattgtgtttgttgggttctccgttcttaaaccacaaaccacttag |
550 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25468452 |
aattgtgttttaaactgatttatgtgaaattctactgttaatggttccaaaagtcattgtgtttgttgggttcttcgttcttaaaccacaaaccacttag |
25468353 |
T |
|
| Q |
551 |
gcaatatcatgt |
562 |
Q |
| |
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|||||||||||| |
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| T |
25468352 |
gcaatatcatgt |
25468341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 25469034 - 25468923
Alignment:
| Q |
17 |
atggacatcatcacactgaattgcaacaaaaaa-taaaccatcgaattagactttgaagtatttgctagaatgaaatgaaatatttctttgcaaggcttg |
115 |
Q |
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|||| ||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25469034 |
atggccattatcacactgaattgcaacaaaaaaataaaccatcaaattagactttgaagtatttgctagaatgaaatgaaatatttctttgcaaggcttg |
25468935 |
T |
|
| Q |
116 |
ttagctagttct |
127 |
Q |
| |
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|||||||||||| |
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| T |
25468934 |
ttagctagttct |
25468923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 180 - 323
Target Start/End: Complemental strand, 25473811 - 25473667
Alignment:
| Q |
180 |
tgatttgttagatcgacctcatttgttattaagggatacagccattttagtttctgattatgaattttgttgttaaaatggtccct-actcgggataaaa |
278 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||| ||||||| || |||| ||| || | | ||| | |||||||||| |||| ||||||| |
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| T |
25473811 |
tgatttgttaaatagacctcatttgttattaagggatacaaccattttggtccctgaccatgcatatcgctgtcacaatggtccctgactcaagataaaa |
25473712 |
T |
|
| Q |
279 |
tgtaaaatagtccctggatgtatacctatgttaaccaattaagtc |
323 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||| ||||||||||| |
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| T |
25473711 |
tgtaaaatagtccctagatgtgtacctctgttagccaattaagtc |
25473667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 25477336 - 25477233
Alignment:
| Q |
26 |
atcacactgaattgcaacaaaaaataaa--ccatcgaattagactttgaagtatttgctagaatgaaatgaaatatttctttgcaaggcttgttagctag |
123 |
Q |
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|||||||| ||||||||||||||| ||| ||||| ||||||||||||||| |||| |||||| |||| | ||||||||||| ||||||||||||| || |
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| T |
25477336 |
atcacactaaattgcaacaaaaaaaaaaacccatcaaattagactttgaagcattttctagaaagaaaaaacatatttctttgtaaggcttgttagcaag |
25477237 |
T |
|
| Q |
124 |
ttct |
127 |
Q |
| |
|
|||| |
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|
| T |
25477236 |
ttct |
25477233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 32660831 - 32660898
Alignment:
| Q |
26 |
atcacactgaattgcaacaaaaaataaac-catcgaattagactttgaagtatttgctagaatgaaat |
92 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||||||| ||||| |||||||||||| |||| |
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|
| T |
32660831 |
atcacactgaattgcaacaaaaaagaaactcatcaaattagacgttgaaccatttgctagaataaaat |
32660898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 514
Target Start/End: Original strand, 25473346 - 25473424
Alignment:
| Q |
436 |
aatgcaaaatagtacaattttgttttaaactgatttatgtaaaattctactgttaatggttccaaaagtcattgtgttt |
514 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||||| ||| ||| || ||||||||| ||| ||||||||||| |
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| T |
25473346 |
aatgcaaaatagtacaattgtgttttgtactgatttatgtgaaagtctgctactaatggttcttaaattcattgtgttt |
25473424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 25468950 - 25468915
Alignment:
| Q |
124 |
ttctttgcaaggcttgttagctagttatgcattcaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
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| T |
25468950 |
ttctttgcaaggcttgttagctagttctgcattcaa |
25468915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 7626381 - 7626309
Alignment:
| Q |
266 |
actcgggataaaatgtaaaatagtccctggatgtatacctatgttaaccaattaagtccttgacgttaaaatt |
338 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||| | |||||||||||| | ||||||||||| ||||| |
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| T |
7626381 |
actcaggataaaatgtaaaatagtttttggatgtatacttctgttaaccaatttaatccttgacgtttaaatt |
7626309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 17582915 - 17582850
Alignment:
| Q |
55 |
catcgaattagactttgaagtatttgctagaatgaaatgaaatatttctttgcaaggcttgttagc |
120 |
Q |
| |
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|||| |||||||||||||| ||||| |||||| |||| ||| |||| |||| ||||||||||||| |
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| T |
17582915 |
catcaaattagactttgaaccatttgttagaataaaataaaagatttatttgtaaggcttgttagc |
17582850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 37576566 - 37576518
Alignment:
| Q |
26 |
atcacactgaattgcaacaaaaaa-taaaccatcgaattagactttgaa |
73 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| |||||||||||||| |
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|
| T |
37576566 |
atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaa |
37576518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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