View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11872_high_3 (Length: 552)
Name: NF11872_high_3
Description: NF11872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11872_high_3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 29 - 469
Target Start/End: Original strand, 27105355 - 27105795
Alignment:
| Q |
29 |
cttattaggttaataatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattag |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105355 |
cttattaggttaataatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattag |
27105454 |
T |
|
| Q |
129 |
gtaaaggttcaaaatccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatct |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105455 |
gtaaaggttcaaaatccttcaacttgcgtctaataccagctacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatct |
27105554 |
T |
|
| Q |
229 |
ccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccaca |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105555 |
ccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccaca |
27105654 |
T |
|
| Q |
329 |
ttaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105655 |
ttaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtt |
27105754 |
T |
|
| Q |
429 |
tagttattgatccaataagtctctctctttcccacacaggt |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105755 |
tagttattgatccaataagtctctctctttcccacacaggt |
27105795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 38 - 469
Target Start/End: Original strand, 27098365 - 27098796
Alignment:
| Q |
38 |
ttaataatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggtt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27098365 |
ttaataatttcatagagtggcctttcatcgagctcactaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggat |
27098464 |
T |
|
| Q |
138 |
caaaatccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacata |
237 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27098465 |
caaaatccttcaagttgcgtctaatacctgctacaatggtcagtactgtttcaccattgctgttaagttttaaggctcttgctcttgatctccaaacata |
27098564 |
T |
|
| Q |
238 |
acctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaa |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||| || | |||||||||| |
|
|
| T |
27098565 |
acctgcaattgattcaaaagttgtgaaccttatatttccactttccttcatcaagctcaacttaagccttgttatcatttcaccatcaatattaaaacaa |
27098664 |
T |
|
| Q |
338 |
tatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattg |
437 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27098665 |
tattgcttcataactgtagtgttgtgttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgttcagttattg |
27098764 |
T |
|
| Q |
438 |
atccaataagtctctctctttcccacacaggt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27098765 |
atccaataagtctctctctttcccacacaggt |
27098796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 107 - 470
Target Start/End: Original strand, 27085768 - 27086131
Alignment:
| Q |
107 |
gaattcccataataaccattaggtaaaggttcaaaatccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagtt |
206 |
Q |
| |
|
|||||||||||||| || |||||||||| ||| ||||||| || ||||||||| ||||| | ||||||| | | ||||| ||||||| | ||||||| |
|
|
| T |
27085768 |
gaattcccataataccctttaggtaaagtatcataatcctttaagttgcgtctactaccaactgcaatggttagcgctgttaaaccattgcttttaagtt |
27085867 |
T |
|
| Q |
207 |
ttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctt |
306 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | || |||| |||||||||||||||||||| | |
|
|
| T |
27085868 |
ttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtct |
27085967 |
T |
|
| Q |
307 |
tgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcata |
406 |
Q |
| |
|
| ||| |||||||||||| || ||||||||||||| || || | ||||| || | |||||| | ||| ||||||| || ||||||||| || ||| |
|
|
| T |
27085968 |
tcttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggtccatg |
27086067 |
T |
|
| Q |
407 |
gggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggtt |
470 |
Q |
| |
|
|| | || |||||| | |||| ||| ||||||||||| || | ||||||||||||||||||| |
|
|
| T |
27086068 |
ggacattgtggaaaagtttgtatagctattgatccaacttgtttttctctttcccacacaggtt |
27086131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 38 - 470
Target Start/End: Original strand, 27069643 - 27070075
Alignment:
| Q |
38 |
ttaataatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggtt |
137 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| || |||||||| ||| |||||||| | |||||||| ||||| || || ||||||| | |
|
|
| T |
27069643 |
ttaacaatttcatagagtggcatttcatcgagctcactcacttttaaaacaacttttgcatccatggtagaattcccgtaataccctttcggtaaagtat |
27069742 |
T |
|
| Q |
138 |
caaaatccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacata |
237 |
Q |
| |
|
|||||||| |||| || ||||| |||||| || || ||| || ||||| | ||||| || |||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
27069743 |
caaaatccatcaagttacgtctcataccaactaacatattcagcattgttttatcattgctgctaagctttaaggctcttgctcttgacctccacacata |
27069842 |
T |
|
| Q |
238 |
acctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaa |
337 |
Q |
| |
|
|||||||| |||||||||||| |||| ||| | |||||| |||||||||||||||||||| |||||| | |||| ||||| || |||||| || |
|
|
| T |
27069843 |
acctgcaagaacttcaaaagttgtaaaccctattttttcacttttattcatcaaactcaacttaagtcttgttatcgtttcgccctctactttaaaagaa |
27069942 |
T |
|
| Q |
338 |
tatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattg |
437 |
Q |
| |
|
|||| ||| |||| |||||| || |||||||| ||| ||||||||||||||||||| ||| ||| || | || |||||| |||||| ||| ||||| |
|
|
| T |
27069943 |
tattgcttaataattgtagtattagtttgattcacaaagggtgaaaatgcaacagattttctgtccatgggacattgtggaaaaggttgtatagctattg |
27070042 |
T |
|
| Q |
438 |
atccaataagtctctctctttcccacacaggtt |
470 |
Q |
| |
|
|||||| || | ||||||||||||||||||| |
|
|
| T |
27070043 |
atccaacttgtgtttctctttcccacacaggtt |
27070075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 192 - 470
Target Start/End: Original strand, 27062730 - 27063002
Alignment:
| Q |
192 |
cattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaa |
291 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
27062730 |
cattgctgctaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatat------tttcgttcatcaa |
27062823 |
T |
|
| Q |
292 |
actcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaaca |
391 |
Q |
| |
|
|||||||||||| |||||| | |||| ||||| || ||||||||||||| ||| |||| | |||| || |||||||| ||| ||||||||||||||| |
|
|
| T |
27062824 |
actcaacttaagtcttgttatcgtttcgccctctactttaaaacaatattgcttaataattttagtattaggttgattcacaaagggtgaaaatgcaaca |
27062923 |
T |
|
| Q |
392 |
gattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggtt |
470 |
Q |
| |
|
||||| ||| ||| |||| || ||||||||||||| ||||||||| ||||| | | ||||||||||||||||||| |
|
|
| T |
27062924 |
gattctctgtccatggggcattgtggaaatggttgtgtagttattgttccaacttggttttctctttcccacacaggtt |
27063002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 38 - 270
Target Start/End: Original strand, 27056534 - 27056765
Alignment:
| Q |
38 |
ttaataatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggtt |
137 |
Q |
| |
|
|||| |||||||||||||||| |||| | |||||| || |||||||| ||| ||| |||| | | ||||| ||||| || || |||||||||| | |
|
|
| T |
27056534 |
ttaacaatttcatagagtggcatttcgttgagctcactcacttttaaaacaacatttacatctatagtagaatttccatattaccctttaggtaaagtat |
27056633 |
T |
|
| Q |
138 |
caaaatccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacata |
237 |
Q |
| |
|
|| |||||| ||| ||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
27056634 |
cataatcctccaagttgcgtctaataccaactgcaatggtcagcactgtttcaccattgctgttaagttttaaggctcttgctcttgacctctacacata |
27056733 |
T |
|
| Q |
238 |
acctgcaattgattcaaaagttgtgaaccttat |
270 |
Q |
| |
|
|||||||| | | |||||||||||||||||||| |
|
|
| T |
27056734 |
acctgcaagt-actcaaaagttgtgaaccttat |
27056765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 171 - 470
Target Start/End: Original strand, 27041354 - 27041653
Alignment:
| Q |
171 |
caatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttat |
270 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
27041354 |
caatggtcaacactgtttcaccattgctgttaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctcat |
27041453 |
T |
|
| Q |
271 |
acctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattc |
370 |
Q |
| |
|
| || ||| |||||||||||||| ||||| ||||| |||||||||||| || ||||||||||||| || || | ||||| || | |||||| |
|
|
| T |
27041454 |
tttttcatttttattcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgattt |
27041553 |
T |
|
| Q |
371 |
agaaaaggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggtt |
470 |
Q |
| |
|
| ||| ||||||| || ||||||||| || ||| || | || |||||| |||| | ||| |||||||| || || | ||||||||||||||||||| |
|
|
| T |
27041554 |
acaaagggtgaaagtgaaacagattctcggtccatgggacattgtggaaaaggttttatagctattgatcgaacttgtttttctctttcccacacaggtt |
27041653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 27045634 - 27045834
Alignment:
| Q |
38 |
ttaataatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggtt |
137 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||| ||||||||||||||| ||| |||| ||| | ||| |||||||| || |||| ||||| | |
|
|
| T |
27045634 |
ttaacaatttcatagagtggcatttcattgagctcactaacttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggat |
27045733 |
T |
|
| Q |
138 |
caaaatccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacata |
237 |
Q |
| |
|
|| || | |||| |||||||||||||| || || |||||| ||||| ||||||||| |||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
27045734 |
cataacctttcatgctgcgtctaataccaactaacatattcaacattgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacata |
27045833 |
T |
|
| Q |
238 |
a |
238 |
Q |
| |
|
| |
|
|
| T |
27045834 |
a |
27045834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 487 - 552
Target Start/End: Complemental strand, 3855697 - 3855632
Alignment:
| Q |
487 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3855697 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
3855632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University